View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_2 (Length: 574)
Name: NF18567_low_2
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 33962327 - 33962600
Alignment:
| Q |
10 |
aagaatataaactatattatgaaaaattaataaacaatcaatgtgtatgattaaactaaaaattgatccattcagtcccatcaataaaagtaagtgaaag |
109 |
Q |
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| T |
33962327 |
aagaaaataaactatattatgaaaaattaataaacaatcaatgtgtatgattaaactaaaaattgatccattcagtcccatcaataaaagtaagtgaaag |
33962426 |
T |
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| Q |
110 |
aaaaggtctagcttcttcatcagtgagttctcttgaccatgatactctccctgcaaaacttgctccaggtcctgtgcatttgtattgtccatagaataca |
209 |
Q |
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| T |
33962427 |
aaaaggtctagcttcttcatcagtgagttctcttgaccatgatactctccctgcaaaacttgctccaggtcctgtgcatttgtattgtccatagaataca |
33962526 |
T |
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| Q |
210 |
gtcctgatagtggtgataataataaaatacaaaacacataagaataagtaatatttaaacctactaataggcatgca |
286 |
Q |
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| T |
33962527 |
gtcctgatagtggtg---ataataaaatacaaaacacataagaataaataatatttaaacctactaataggcatgca |
33962600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 419 - 525
Target Start/End: Original strand, 33962784 - 33962890
Alignment:
| Q |
419 |
aaacaaacaacacttgaggttttaaatagttgttttatttctgtgacaagtatggtatcatcattgttgggtatgcatcgtaaatcctaagcttgaaaca |
518 |
Q |
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| T |
33962784 |
aaacaaacaatacttgaggttttaaatagttgttttgttttcttaacgattatggtaccatcattgttgggtgtgcatcgtaaatcctaagtttgaaaca |
33962883 |
T |
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| Q |
519 |
ataatac |
525 |
Q |
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| T |
33962884 |
ataatac |
33962890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 33962701 - 33962782
Alignment:
| Q |
308 |
tgacattaatgatcattttataactattttgaagagaatttacactttgtatttcgagttgataaagtcaaactcttatcact |
390 |
Q |
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| T |
33962701 |
tgacatcaatgat-attttataactgtttttaagagaatttacactttgtacttcgagttgaaaaagtcaaactattatcact |
33962782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 43078839 - 43078685
Alignment:
| Q |
70 |
aattgatccattcagtcccatcaataaaagtaagtgaaagaaaaggtctagcttcttcatcagtgagttctcttgaccatgatactctccctgcaaaact |
169 |
Q |
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| T |
43078839 |
aattaatccactcagacccatcaacataattgagtgaaataaatggtttagcctcctcatcagtgagttcccttgaccatgctaccctccctgcatagct |
43078740 |
T |
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| Q |
170 |
tgctccaggtcctgtgcatttgtattgtccatagaatacagtcctgatagtggtg |
224 |
Q |
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| T |
43078739 |
tgctcctggtcctgtgcatttgtattgtccatagaatacagtcctgataatggtg |
43078685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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