View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_3 (Length: 561)
Name: NF18567_low_3
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 82 - 540
Target Start/End: Complemental strand, 8107636 - 8107174
Alignment:
| Q |
82 |
gttttgagtttattttgtagatcagaaacaacctatgtaacgatct---tctttcattgaaaataccattagtagttgtcgtcgtcctctacacatgata |
178 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
8107636 |
gttttgagtttattttgtagatcagaaacacgctatgtgacgatctaattctttcattgaaaataccattcgtaattgtcgtcgtcctctacacatgata |
8107537 |
T |
|
| Q |
179 |
cagacaactcttcttcagttcgatcagaaaattgatttatgccaattgtgtaactgtggttacctgtgaaattcattacagagaaagagaaagatattta |
278 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8107536 |
cagacaactcttcttcagttcaatcagaaaattgatttatgccaattgtgtaactgtgattacctgtggaattcattacagagaaagagaaagatattta |
8107437 |
T |
|
| Q |
279 |
aaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactggatggattaaaaaa-tacctttgttaaactccttaacatgtt |
377 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| ||| ||| |||||| ||||||||||||||||||||||||||| |
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| T |
8107436 |
aaatactactaacaatcgataatctcatcgattattgaattgaaacttaaacaaactagatagataaaaaaattacctttgttaaactccttaacatgtt |
8107337 |
T |
|
| Q |
378 |
ccaattccttcttaaatatttctctacgtttcttcatctcgttgctgcttgaatatgtccgattatgctccaacatccaatcatgaaacaatttatcaac |
477 |
Q |
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|||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8107336 |
ccaatttcttcttgaatagttctcgacgtttcttcatctcgttgctgcttgaatatgtccgattatgctccaacatccaatcatgaaacaatttatcaac |
8107237 |
T |
|
| Q |
478 |
ggatgcttctgaaagagttggatatgattcaaattcagagattgttattgttggagactcatc |
540 |
Q |
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| T |
8107236 |
ggatgcttctgaaagtgttggatatgattcaaattcagagagtgttattgttggagactcatc |
8107174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 80 - 540
Target Start/End: Complemental strand, 8112286 - 8111819
Alignment:
| Q |
80 |
ccgttttgagtttattttgtagatcagaaacaacctatgtaacgatct---tctttcattgaaaataccattagtagttgtcgtcgtc---ctctacaca |
173 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
8112286 |
ccgttttgagtttattttatagatcagaaacacgctatgtgacgatctaattctttcattgaaaataccattcgtagttgtcgtcgtcgtcctctacaca |
8112187 |
T |
|
| Q |
174 |
tgatacagacaactcttcttcagttcgatcagaaaattgatttatgccaattgtgtaactgtggttacctgtgaaattcattacagagaaagagaaagat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
8112186 |
tgatacagacaactcttcttcagttcgatcagaaaattgatttatgccaattgtgtaactgtgattacctgtggaattcattacagagaaagagaaagat |
8112087 |
T |
|
| Q |
274 |
atttaaaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactggatggattaaaaaat-acctttgttaaactccttaac |
372 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| ||| ||| ||||||| ||||||||||||||||||||| |
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| T |
8112086 |
atttaaaatactactaacaatcgataatctcatcgattattgaattgaaacttaaacaaactagatagataaaaaaattacctttgttaaactccttaac |
8111987 |
T |
|
| Q |
373 |
atgttccaattccttcttaaatatttctctacgtttcttcatctcgttgctgcttgaatatgtccgattatgctccaacatccaatcatgaaacaattta |
472 |
Q |
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||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8111986 |
atgttccaatttcttcttgaatagttctcgacgtttcttcatctcgttgctgcttgaatatgtccgattatgctccaacatccaatcatgaaacaattta |
8111887 |
T |
|
| Q |
473 |
tcaacggatgcttctgaaagagttggatatgattcaaattcagagattgttattgttggagactcatc |
540 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
8111886 |
tcaacggatgcttctgaaagtgttggatatgattcaaattcagagagtgttattgttggagactcatc |
8111819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 82 - 363
Target Start/End: Complemental strand, 8093973 - 8093698
Alignment:
| Q |
82 |
gttttgagtttattttgtagatcagaaacaacctatgtaacgatcttctttcattgaaaataccattagtagttgtcgtcgtcctctac---acatgata |
178 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||| || | || ||| |||||||||| |||||||| |
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| T |
8093973 |
gttttgagtttattttgtagatcaggaacatgctatgcgacgatcttatttcattgaaaata---ttttttgtcgtcttcgtcctctatgaaacatgata |
8093877 |
T |
|
| Q |
179 |
cagacaactcttcttcagttcgatcagaaaattgatttatgccaattgtgtaactgtggttacctgtgaaattcattacagagaaagagaaagatattta |
278 |
Q |
| |
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|||| ||||||||| |||| ||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||| |||||| ||||||| ||| |
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| T |
8093876 |
cagatgactcttctttagttaaatcagaaaattaatttatgccaattatgtaactgtgattacctgcgaaattcattacaatgaaagataaagatactta |
8093777 |
T |
|
| Q |
279 |
aaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactggatggattaaaaaatacctttgttaaa |
363 |
Q |
| |
|
||||||||| ||||| | |||| || ||||||||||||||| || | |||| |||||||| ||||||||||||||||||| |
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|
| T |
8093776 |
aaatactacatacaac---tcatctcattgattattgaattgaaactga---aaaccggatggataaaaaaatacctttgttaaa |
8093698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 1387036 - 1386968
Alignment:
| Q |
375 |
gttccaattccttcttaaatatttctctacgtttcttcatctcgttgctgcttgaatatgtccgattat |
443 |
Q |
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||||||| ||| |||| ||||||||| | ||| ||||||||||| || ||||||| ||||| ||||||| |
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| T |
1387036 |
gttccaactccatcttgaatatttctttgcgtctcttcatctcggtgatgcttgagtatgttcgattat |
1386968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 30879172 - 30879248
Alignment:
| Q |
357 |
tgttaaactccttaacatgttccaattccttcttaaatatttctctacgtttcttcatctcgttgctgcttgaatat |
433 |
Q |
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||||||||| || || ||||||||||| |||||| | ||||||||||| |||||||||| ||| |||||||||||| |
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| T |
30879172 |
tgttaaacttctcaagatgttccaatttcttcttgagtatttctctacatttcttcatcccgtcactgcttgaatat |
30879248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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