View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18567_low_4 (Length: 477)

Name: NF18567_low_4
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18567_low_4
NF18567_low_4
[»] chr3 (5 HSPs)
chr3 (231-461)||(31786073-31786301)
chr3 (149-209)||(31786336-31786396)
chr3 (43-75)||(31786470-31786502)
chr3 (303-360)||(26141681-26141739)
chr3 (301-361)||(50384614-50384674)
[»] chr4 (2 HSPs)
chr4 (303-360)||(24355765-24355823)
chr4 (290-331)||(18883901-18883942)
[»] chr1 (1 HSPs)
chr1 (300-360)||(42795432-42795492)
[»] chr8 (1 HSPs)
chr8 (303-346)||(45197142-45197185)
[»] chr7 (2 HSPs)
chr7 (282-329)||(15959084-15959131)
chr7 (304-342)||(11718523-11718561)
[»] chr6 (3 HSPs)
chr6 (14-49)||(11519947-11519982)
chr6 (311-360)||(10324497-10324547)
chr6 (14-43)||(11267707-11267736)
[»] chr5 (1 HSPs)
chr5 (303-360)||(38353623-38353681)
[»] chr2 (2 HSPs)
chr2 (14-47)||(7359015-7359048)
chr2 (311-360)||(15354361-15354410)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 231 - 461
Target Start/End: Complemental strand, 31786301 - 31786073
Alignment:
Q  231 aatgcttacagagtacatgtcaaggaagtaaatatagtaacaattcattggaagttatgtagtcaatactttaaaagtctaaaaaataatattttcaact 330  Q
    |||||||| |||| |||  | ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  31786301 aatgcttatagagcacagattaaggaagcaaatatagtaacaattcattggaagttatgtagtcaatacttcaaaaatctaaaaaataatattttcaact 31786202  T
Q  331 taaaactttctcttttgatttccttaaccagggccagtgccccgagcgtaatagttagcatgaccnnnnnnnnnnnaacatttcttttcttgactcgagt 430  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||           ||||||||||||||||||||| ||    
T  31786201 taaaactttctcttttgatttccttaaccagggctggtgccccgagcgtaatagttagcgtgacc--tttttttttaacatttcttttcttgactcgggt 31786104  T
Q  431 tgcattttggactgaaatttgaggttctctt 461  Q
    ||||| |||||||||||||||||||||||||    
T  31786103 tgcatcttggactgaaatttgaggttctctt 31786073  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 31786396 - 31786336
Alignment:
Q  149 ctatgagaaagggttaccgaaacacaagtatgtccgacaacgtataatagtaccacccatg 209  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31786396 ctatgagaaagggttacctaaacacaagtatgtccgacaacgtataatagtaccacccatg 31786336  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 31786502 - 31786470
Alignment:
Q  43 atagaaggcacgagttttcccaatagtaacttg 75  Q
    |||||||||||||||||||||||||||||||||    
T  31786502 atagaaggcacgagttttcccaatagtaacttg 31786470  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 26141739 - 26141681
Alignment:
Q  303 aaaagtctaaaaaataatattttcaacttaaaactttc-tcttttgatttccttaacca 360  Q
    |||| ||||||||||  |||||||||||| |||||||| | ||||||||||||||||||    
T  26141739 aaaaatctaaaaaatggtattttcaactttaaactttctttttttgatttccttaacca 26141681  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 50384674 - 50384614
Alignment:
Q  301 ttaaaagtctaaaaaataatattttcaacttaaaactttctcttttgatttccttaaccag 361  Q
    |||||||| |||||| | | ||||| || ||||||||||||||||| | ||||||||||||    
T  50384674 ttaaaagtataaaaagtgacatttttaatttaaaactttctcttttaacttccttaaccag 50384614  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 24355823 - 24355765
Alignment:
Q  303 aaaagtctaaaaaataatattttcaacttaaaactttctc-ttttgatttccttaacca 360  Q
    |||||||||||||||  ||||||||||||||||||||||| ||||| ||||||||||||    
T  24355823 aaaagtctaaaaaattgtattttcaacttaaaactttctctttttggtttccttaacca 24355765  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 18883942 - 18883901
Alignment:
Q  290 tagtcaatactttaaaagtctaaaaaataatattttcaactt 331  Q
    |||||||| ||| |||||||||||||||| ||||||||||||    
T  18883942 tagtcaattcttcaaaagtctaaaaaatattattttcaactt 18883901  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 42795432 - 42795492
Alignment:
Q  300 tttaaaagtctaaaaaataatattttcaacttaaaactttctcttttgatttccttaacca 360  Q
    ||||||||| |||||||| || |||||||||||||| ||||| ||||  ||||||||||||    
T  42795432 tttaaaagtataaaaaatgattttttcaacttaaaattttctttttttgtttccttaacca 42795492  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 45197185 - 45197142
Alignment:
Q  303 aaaagtctaaaaaataatattttcaacttaaaactttctctttt 346  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||    
T  45197185 aaaagtttaaaaattaatattttcaacttaaaactttctttttt 45197142  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 15959131 - 15959084
Alignment:
Q  282 aagttatgtagtcaatactttaaaagtctaaaaaataatattttcaac 329  Q
    |||||| ||||||| | ||||||||||||||||||| |||||||||||    
T  15959131 aagttacgtagtcagttctttaaaagtctaaaaaatgatattttcaac 15959084  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 11718561 - 11718523
Alignment:
Q  304 aaagtctaaaaaataatattttcaacttaaaactttctc 342  Q
    |||||||||||| || |||||||||||||||||||||||    
T  11718561 aaagtctaaaaagtattattttcaacttaaaactttctc 11718523  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 11519947 - 11519982
Alignment:
Q  14 aggacattaattttcttattagtatatagatagaag 49  Q
    |||||||||||||||||||||||||||| |||||||    
T  11519947 aggacattaattttcttattagtatatatatagaag 11519982  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 10324497 - 10324547
Alignment:
Q  311 aaaaaataatattttcaacttaaaactttc-tcttttgatttccttaacca 360  Q
    |||||||| ||||||||||||||||||||| | ||||| ||||||||||||    
T  10324497 aaaaaatagtattttcaacttaaaactttctttttttggtttccttaacca 10324547  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 11267736 - 11267707
Alignment:
Q  14 aggacattaattttcttattagtatataga 43  Q
    ||||||||||||||||||||||||||||||    
T  11267736 aggacattaattttcttattagtatataga 11267707  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 38353681 - 38353623
Alignment:
Q  303 aaaagtctaaaaaataatattttcaacttaaaactttc-tcttttgatttccttaacca 360  Q
    ||||||||||||| |  ||||||||||||||||||||| | |||| |||||||||||||    
T  38353681 aaaagtctaaaaagtggtattttcaacttaaaactttctttttttaatttccttaacca 38353623  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 7359048 - 7359015
Alignment:
Q  14 aggacattaattttcttattagtatatagataga 47  Q
    |||||||||||||||||||||||||||| |||||    
T  7359048 aggacattaattttcttattagtatatatataga 7359015  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 15354410 - 15354361
Alignment:
Q  311 aaaaaataatattttcaacttaaaactttctcttttgatttccttaacca 360  Q
    ||||||| ||||||||||| ||||||||||| ||||  ||||||||||||    
T  15354410 aaaaaatgatattttcaacctaaaactttcttttttagtttccttaacca 15354361  T

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