View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_6 (Length: 448)
Name: NF18567_low_6
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 35273766 - 35273347
Alignment:
| Q |
13 |
aaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273766 |
aaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatc |
35273667 |
T |
|
| Q |
113 |
ttagcagcagcacttaacttgtgcctgcggattccgatgaagatcttatccttatctttatctttagaaattttcattaaaacgagggaatcgccgccaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273666 |
ttagcagcagcacttaacttgtgcctgcggattccgatgaagatcttatccttatctttatctttagaaattttcattaaaacgagggaatcgccgccaa |
35273567 |
T |
|
| Q |
213 |
taattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagacccacggtaggtgtggcgaaagttccaaacaaaattgtg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273566 |
taattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagacccacggtaggtgtggcgaaagttccaaacaaaattgtg |
35273467 |
T |
|
| Q |
313 |
gatgtccttgatcggaagtacctgagacggcattggggatgttaggtcaagtggcgggaatatcaattttgcgcattcagaaggtacggagaatgcaccg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35273466 |
gatgtccttgatcggaagtacctgagacggcattggggatgttaggtcaagtggcgggaatatcaatttcgcgcattcagaaggtacggagaatgcaccg |
35273367 |
T |
|
| Q |
413 |
ccattattagcatccgactg |
432 |
Q |
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|||||||||||||||||||| |
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| T |
35273366 |
ccattattagcatccgactg |
35273347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 17976354 - 17976462
Alignment:
| Q |
13 |
aaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatc |
112 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | ||||||||||| || ||||||||||||||||| |||||||| ||| |||||||| |||||| |
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| T |
17976354 |
aaaattacaccaacctttagccgttggataatacacaacttcaaaagccaagttcttatccgccaattccactgcctccgtaaacgatttttctgttatc |
17976453 |
T |
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| Q |
113 |
ttagcagca |
121 |
Q |
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||||||||| |
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| T |
17976454 |
ttagcagca |
17976462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 17914471 - 17914401
Alignment:
| Q |
356 |
aggtcaagtggcgggaatatcaattttgcgcattcagaaggtacggagaatgcaccgccattattagcatc |
426 |
Q |
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||||||||||||||||| || |||||||||||||| ||| || |||||||||||||| ||||||||||| |
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| T |
17914471 |
aggtcaagtggcgggaagattaattttgcgcattcgctaggcactgagaatgcaccgccgttattagcatc |
17914401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 293
Target Start/End: Complemental strand, 17914644 - 17914534
Alignment:
| Q |
183 |
ttttcattaaaacgagggaatcgccgccaataattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagacccacggta |
282 |
Q |
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||||||| ||||| | ||| ||||||||||| | |||||| |||||| |||| |||||| || |||||||| ||||||||| ||||| ||||||||| |
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| T |
17914644 |
ttttcatgaaaactaaggagtcgccgccaatcagtttcttctcgtcaacaaactcactccaattggtggtgatcaggtgtcgcaagggagtcccacggta |
17914545 |
T |
|
| Q |
283 |
ggtgtggcgaa |
293 |
Q |
| |
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| |||||||| |
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| T |
17914544 |
gacgtggcgaa |
17914534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 426
Target Start/End: Original strand, 17976688 - 17976758
Alignment:
| Q |
356 |
aggtcaagtggcgggaatatcaattttgcgcattcagaaggtacggagaatgcaccgccattattagcatc |
426 |
Q |
| |
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||||||||||||||||| || ||||| |||||||| || || ||||||||||||||||| |||||||| |
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| T |
17976688 |
aggtcaagtggcgggaagattaatttcgcgcattccactggcacagagaatgcaccgccattgttagcatc |
17976758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 8823727 - 8823655
Alignment:
| Q |
49 |
aacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatcttagcagca |
121 |
Q |
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||||||||||| || ||||||| |||||| || ||||||||||||| |||| || ||||||||||||||| |
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| T |
8823727 |
aacttcaaaagcgatgttcttattcgccaactccactgcctccataaccgattctttagttatcttagcagca |
8823655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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