View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_7 (Length: 414)
Name: NF18567_low_7
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 15230369 - 15230554
Alignment:
| Q |
1 |
tatgtatataatttcgaaaatgtatctgtcaattt-attgatcacgagttctagaatattttgttttggaaatttctaatctcttccacattggtgtgac |
99 |
Q |
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| T |
15230369 |
tatgtatataatttcgaaaatttatctgtcagttttattgatcgcgagttctcgaatattttctttttgaaatttctaatctcttccacattggtgtgac |
15230468 |
T |
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| Q |
100 |
aggcatatccaggtatgtctggggataaattaactcatttcttcgtagaatgggtaagaaatatgcctttataattacaatatgga |
185 |
Q |
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| T |
15230469 |
aggcatatccaggtatgtctggggataaattaactcatttcttcgtagaatgggtaagaaatatgtctttctacttaccatatgga |
15230554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 282 - 404
Target Start/End: Original strand, 15230722 - 15230844
Alignment:
| Q |
282 |
gaaataaattgcagaagaatagcatccaacacacaggctgcaccaatatgctatgttctggtttcgtgcaaactagccaaaaaatttatgttggtgcacc |
381 |
Q |
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| T |
15230722 |
gaaataaattgcagaagaatagcatccaacatacaggctgcaccaatatgctatgttctggtttcgtgcaaactagccaaaaaatttatgttggtgcacc |
15230821 |
T |
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| Q |
382 |
cgtggcgaatgtatcttcctatg |
404 |
Q |
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| T |
15230822 |
cgtggctaatgtatcttcctatg |
15230844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 15248524 - 15248619
Alignment:
| Q |
75 |
ctaatctcttccacattggtgtgacaggcatatccaggtatgtctggggataaattaactcatttcttcgtagaatgggtaagaaatatgcctttata |
172 |
Q |
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| T |
15248524 |
ctaatctcttccacattggtgg--caggtatttccaggtttgtcaggagataaaaaaagtcatttcttcgtagaatgggtaagaaatatgtctttata |
15248619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 15249001 - 15249069
Alignment:
| Q |
314 |
acaggctgcaccaatatgctatgttctggtttcgtgcaaactagccaaaaaatttatgttggtgcaccc |
382 |
Q |
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| T |
15249001 |
acaggctgcaccaattcgctatgtcctggttttgtgcaaactagcacaaaaatttatattggttcaccc |
15249069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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