View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18567_low_9 (Length: 367)
Name: NF18567_low_9
Description: NF18567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18567_low_9 |
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| [»] scaffold1521 (1 HSPs) |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 42126206 - 42126019
Alignment:
| Q |
1 |
agagaaagccacatgacattagcatgaaagattagtttgaacggaggaattttggtgggatgacacataagaaaattgcaccttaaaatacatgtatgta |
100 |
Q |
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| T |
42126206 |
agagaaattcacgtgacattagcattaaagattagtttgaacggaggagttttggtgagatgacacataagaaaattgcaccttaaaatacatgtatgta |
42126107 |
T |
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| Q |
101 |
tgtatgaagaggttttttagagtgccacatgggcacaatctaagcataaggttaactcaagtttaaaagtcaacatagtattctaattttaa |
192 |
Q |
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| T |
42126106 |
tg----aagaggttttttagagtgccacataggcacaatctaagcataaggttaactcaagtttaaaagtcaacatagtattctaattttaa |
42126019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 42125969 - 42125857
Alignment:
| Q |
241 |
gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaacatacttatgttatcacggagaatatagattagagttggtcggataattac |
340 |
Q |
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| T |
42125969 |
gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaatatacttatgctatcacggagaatatagattagaattgatcggataattac |
42125870 |
T |
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| Q |
341 |
agatgggacaatc |
353 |
Q |
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| T |
42125869 |
agatgggacaatc |
42125857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3738503 - 3738599
Alignment:
| Q |
1 |
agagaaagccacatgacattagcatgaaagattagtttgaacggaggaattttggtgggatgacacataagaaaattgcaccttaaaatacatgtat |
97 |
Q |
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||||||||||||||| ||||||||||||| ||| ||| ||| || || |||||||| | ||||||||||| ||| || | || | ||||||||||| |
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| T |
3738503 |
agagaaagccacatggcattagcatgaaaaattggttagaaagggagagttttggtgaggtgacacataagcaaagtgtagctcagaatacatgtat |
3738599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1521 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1521
Description:
Target: scaffold1521; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 174 - 130
Alignment:
| Q |
52 |
ttggtgggatgacacataagaaaattgcaccttaaaatacatgta |
96 |
Q |
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| T |
174 |
ttggtgagctgacacataagcaaattgcaccttagaatacatgta |
130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 30545 - 30589
Alignment:
| Q |
52 |
ttggtgggatgacacataagaaaattgcaccttaaaatacatgta |
96 |
Q |
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| T |
30545 |
ttggtgagctgacacataagcaaattgcaccttagaatacatgta |
30589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 31336 - 31380
Alignment:
| Q |
52 |
ttggtgggatgacacataagaaaattgcaccttaaaatacatgta |
96 |
Q |
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|||||| | ||||||||||| ||||||||||||| |||||||||| |
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| T |
31336 |
ttggtgagctgacacataagcaaattgcaccttagaatacatgta |
31380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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