View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18568_low_1 (Length: 451)
Name: NF18568_low_1
Description: NF18568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18568_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 53090257 - 53090045
Alignment:
| Q |
15 |
atatataagtaaattcatttgtgttttcaatatagcgtgacaagagaaatgctagcaacacacattgttggaaaatgtatgttagaatgtgtgttgataa |
114 |
Q |
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| T |
53090257 |
atatataagtaaattcatttgtgctttcaatatagtgtgacaagagaaatgctagcaacacacattattgaaaagtatatgttagaacgtgtgttgataa |
53090158 |
T |
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| Q |
115 |
catttctca-------gtttgacaatatgatgcgacatgagtgatagatatactcaaatgggtgttgct--atatctcccaataaaatatatagcgaatg |
205 |
Q |
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| T |
53090157 |
catttctcatttctcagtttaacaatatgatgcgacatgagtgatagatatactcaaatgggtgttgctatatatctcccaataaaatatatagcgaatg |
53090058 |
T |
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| Q |
206 |
attcatgaatgta |
218 |
Q |
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| T |
53090057 |
attcacgaatgta |
53090045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 223 - 379
Target Start/End: Complemental strand, 53089964 - 53089819
Alignment:
| Q |
223 |
cgtattgtgaaacttcgtgaacccacttctcgctatataaagcattttcctactcaaattctatggtgcgacatgaatgatagatatactcaaattatta |
322 |
Q |
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| T |
53089964 |
cgtattgtgaaacttcgtgaacccacttctcgctatataaagcattttcctactcaaattctc-----------gaatgatagatatactcaaattatta |
53089876 |
T |
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| Q |
323 |
atcatttggtcagaaaaattaattattgacccgtaggtatgtaaaaagtaaaaacat |
379 |
Q |
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| T |
53089875 |
atcatttggtcagaaaaattaattattgacccgtaggtatgtaaaaagtaaaaacat |
53089819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 53089765 - 53089703
Alignment:
| Q |
372 |
aaaaacattttgggcatcttagagattaataaggattatctgacagtctaatttcctcatgat |
434 |
Q |
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| T |
53089765 |
aaaatcattttgggcatcttagagattaattaggattatctgacggtctaatttcctcatgat |
53089703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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