View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18568_low_4 (Length: 333)

Name: NF18568_low_4
Description: NF18568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18568_low_4
NF18568_low_4
[»] chr5 (1 HSPs)
chr5 (1-311)||(499098-499408)
[»] chr7 (6 HSPs)
chr7 (40-311)||(25638406-25638677)
chr7 (169-311)||(25485284-25485426)
chr7 (113-311)||(25503477-25503681)
chr7 (166-306)||(25446353-25446493)
chr7 (166-311)||(25435457-25435602)
chr7 (113-311)||(25477907-25478111)
[»] chr2 (4 HSPs)
chr2 (62-311)||(35054035-35054284)
chr2 (226-311)||(35045210-35045295)
chr2 (62-311)||(35176912-35177161)
chr2 (197-311)||(35183004-35183118)
[»] chr4 (5 HSPs)
chr4 (206-306)||(31245085-31245185)
chr4 (280-309)||(31159291-31159320)
chr4 (281-309)||(31019843-31019871)
chr4 (281-309)||(31029724-31029752)
chr4 (281-309)||(31489675-31489703)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 499098 - 499408
Alignment:
Q  1 tccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaaggagctttatgttgtgtagtctattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  499098 tccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaaggagttttatgttgtgtagtctattt 499197  T
Q  101 cttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  499198 cttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacatccaccat 499297  T
Q  201 ctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499298 ctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattcc 499397  T
Q  301 acccatccccc 311  Q
    |||||||||||    
T  499398 acccatccccc 499408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 311
Target Start/End: Complemental strand, 25638677 - 25638406
Alignment:
Q  40 ttgctcaatttgatcaatatcatcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctct 139  Q
    ||||||||||||||||| ||  ||||||||||||||||||||| |||| ||||| |||| ||||||||| |  | |||||| | |||||| || |  |||    
T  25638677 ttgctcaatttgatcaacattgtcaagaactacaaggagctttttgttttgtagcctatctcttacaattcttgctatttcaggaggactgtacgtgtct 25638578  T
Q  140 agattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaag 239  Q
    ||| | ||||||  ||||||| || ||||||||| |||||||||||||  |    | || |||  ||||||||||  ||||||||| ||  | |||| ||    
T  25638577 agaattttttcttctatagttcgacgaagaatttctttctgcacagcattagcaccgccctcttcataaattttgtgaacattctcgatgtaacaacgag 25638478  T
Q  240 cgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattccacccatccccc 311  Q
      | |||||||||||||||| ||||||||||||| ||  ||||||| ||||| |||||||||||||||||||    
T  25638477 tatcaaactgatatgagattctgtcatacaagacagttgcaagagtagtctttcctattccacccatccccc 25638406  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 169 - 311
Target Start/End: Complemental strand, 25485426 - 25485284
Alignment:
Q  169 aatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatac 268  Q
    ||||||||||||||||||||||    |||||||   ||||||||||||||| || |||||||| |||||||| | ||| ||| |||||||||||||||||    
T  25485426 aatttgtttctgcacagcaacagcaccaccatcctcataaattttgctaacgttttcaataaaacaacaagcatcaaattgaaatgagattttgtcatac 25485327  T
Q  269 aagaccgtcacaagagttgtcttccctattccacccatccccc 311  Q
    || || ||  ||||||||||||||||||| ||| |||| ||||    
T  25485326 aaaacggtggcaagagttgtcttccctatgccatccatacccc 25485284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 311
Target Start/End: Original strand, 25503477 - 25503681
Alignment:
Q  113 gatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattt 212  Q
    |||||||| |||||||| ||||| || |||||   |||| | | ||||||||||||||||||| ||||||||||||      ||||||||||||||||||    
T  25503477 gatatttcagaaggactgtatgcatccagatttggttctttcagagtttgatgaagaatttgtctctgcacagcaatggcaccaccatctctataaattt 25503576  T
Q  213 tgctaacattctcaataaagcaacaagcgtgaaactgata------tgagattttgtcatacaagaccgtcacaagagttgtcttccctattccacccat 306  Q
    |||||||||| || | ||| ||||||||   ||| |||||      ||||||  ||||||||||||| ||  ||||||||||||||||||| ||||||||    
T  25503577 tgctaacattttcgaaaaaacaacaagcaccaaattgataatgatgtgagatcctgtcatacaagacagttgcaagagttgtcttccctatgccacccat 25503676  T
Q  307 ccccc 311  Q
    |||||    
T  25503677 ccccc 25503681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 25446493 - 25446353
Alignment:
Q  166 aagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtca 265  Q
    |||||||||||||||||||||||||    ||||||||  ||||||||| ||||| || |||||||| |||||||| | ||| |||||||||||| |||||    
T  25446493 aagaatttgtttctgcacagcaacagcaccaccatcttcataaattttactaacgttttcaataaaacaacaagcatcaaattgatatgagattctgtca 25446394  T
Q  266 tacaagaccgtcacaagagttgtcttccctattccacccat 306  Q
    ||||| ||  |  |||||| |||||| ||||||||| ||||    
T  25446393 tacaaaactttagcaagagctgtctttcctattccatccat 25446353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 311
Target Start/End: Original strand, 25435457 - 25435602
Alignment:
Q  166 aagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtca 265  Q
    ||||||||||||||||||||||| |    |||| | |  ||||| ||||||||| ||||||| ||| |||||||| | ||| |||||||||||| |||||    
T  25435457 aagaatttgtttctgcacagcaatagcaccaccgttttcataaaatttgctaacgttctcaacaaaacaacaagcatcaaattgatatgagattctgtca 25435556  T
Q  266 tacaagaccgtcacaagagttgtcttccctattccacccatccccc 311  Q
    ||||| || ||  ||||||||||||| ||||||||| |||| ||||    
T  25435557 tacaaaacggtggcaagagttgtctttcctattccatccatacccc 25435602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 311
Target Start/End: Original strand, 25477907 - 25478111
Alignment:
Q  113 gatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattt 212  Q
    |||||||| || ||||| ||| | || ||||| |||||| ||||||| ||||  |||||| ||||||||||||||| |    ||||||||||||||||||    
T  25477907 gatatttcagatggactgtatccttccagatttttttcttttatagtctgatctagaattcgtttctgcacagcaatagcaccaccatctctataaattt 25478006  T
Q  213 tgctaacattctcaataaagcaacaagcgtgaaactgatat------gagattttgtcatacaagaccgtcacaagagttgtcttccctattccacccat 306  Q
    |||| |||| |||||  || |||||||| | ||| ||||||      |||||| |||||||||||||  |  ||||||||||||| ||||| ||| ||||    
T  25478007 tgctgacatcctcaacgaaacaacaagcatcaaattgatattgatgggagattgtgtcatacaagacatttgcaagagttgtctttcctatgccatccat 25478106  T
Q  307 ccccc 311  Q
    |||||    
T  25478107 ccccc 25478111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 311
Target Start/End: Original strand, 35054035 - 35054284
Alignment:
Q  62 tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt 161  Q
    |||||||||||||| | |||| |||||   ||||| || | |||||| |  |||||||| ||||| || |||| ||||||||  |||||   ||| ||||    
T  35054035 tcaagaactacaagaaactttctgttgcacagtcttttacgtacaattccagatatttcagaagggctgtatgtctctagatatttttcatctatggttt 35054134  T
Q  162 gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagatttt 261  Q
    |  |||| ||||||||||| | || ||||    ||||||||||||| |||||||| |||||||||||||| || |  || | ||| ||| | |||||| |    
T  35054135 gccgaaggatttgtttctggagagaaacagcaccaccatctctatagattttgcttacattctcaataaaacagcttgcatcaaattgagaggagattct 35054234  T
Q  262 gtcatacaagaccgtcacaagagttgtcttccctattccacccatccccc 311  Q
     ||||||||||| | | ||||||||||||| || |||||| |||||||||    
T  35054235 atcatacaagacagacgcaagagttgtctttccgattccagccatccccc 35054284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 35045210 - 35045295
Alignment:
Q  226 aataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattccacccatccccc 311  Q
    |||||| |||| ||| | |||||||||||||||| |||||||||| || ||  || |||||||||| |||| ||||||||||||||    
T  35045210 aataaaacaacgagcatcaaactgatatgagattctgtcatacaaaacagtagcatgagttgtctttcctactccacccatccccc 35045295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 311
Target Start/End: Original strand, 35176912 - 35177161
Alignment:
Q  62 tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt 161  Q
    |||||||||||||| | |||| |||||   ||||| || | |||||| |  |||||||| ||||| || |||| |||||| || ||||| ||| | | ||    
T  35176912 tcaagaactacaagaaactttttgttgcaaagtcttttacgtacaattccagatatttcagaagggctgtatgtctctaggtttttttcacttgtggctt 35177011  T
Q  162 gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagatttt 261  Q
    |  |||| ||||||||||| ||||||       |||||||| ||||||||||||| |||||||||||||| ||    || | ||||||||| |||| | |    
T  35177012 gccgaaggatttgtttctgtacagcagtggcaccaccatctttataaattttgcttacattctcaataaaacagattgcatcaaactgataggagactct 35177111  T
Q  262 gtcatacaagaccgtcacaagagttgtcttccctattccacccatccccc 311  Q
     ||||||||||| |   ||||||||||||| || |||||| |||||||||    
T  35177112 atcatacaagacggaagcaagagttgtctttccgattccagccatccccc 35177161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 35183004 - 35183118
Alignment:
Q  197 ccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttcccta 296  Q
    |||||| ||||||||||||| |||||||||||||| ||||  || | ||||||||| |||| | | || || ||||| |   ||||||||||||| |  |    
T  35183004 ccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgataagagactctatcgtataagacagaagcaagagttgtctttctga 35183103  T
Q  297 ttccacccatccccc 311  Q
    ||||| |||||||||    
T  35183104 ttccagccatccccc 35183118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 31245185 - 31245085
Alignment:
Q  206 taaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattccaccca 305  Q
    |||||||| || |||| |||||||||||| ||||| | ||| ||||  |||||| | ||||||||  | ||  ||||||| |||||||||||||||||||    
T  31245185 taaattttacttacatcctcaataaagcagcaagcatcaaattgattagagattctatcatacaaagcagtagcaagagtagtcttccctattccaccca 31245086  T
Q  306 t 306  Q
    |    
T  31245085 t 31245085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 309
Target Start/End: Original strand, 31159291 - 31159320
Alignment:
Q  280 aagagttgtcttccctattccacccatccc 309  Q
    ||||||||||||||||||||||||||||||    
T  31159291 aagagttgtcttccctattccacccatccc 31159320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 31019843 - 31019871
Alignment:
Q  281 agagttgtcttccctattccacccatccc 309  Q
    |||||||||||||||||||||||||||||    
T  31019843 agagttgtcttccctattccacccatccc 31019871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 31029724 - 31029752
Alignment:
Q  281 agagttgtcttccctattccacccatccc 309  Q
    |||||||||||||||||||||||||||||    
T  31029724 agagttgtcttccctattccacccatccc 31029752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 31489703 - 31489675
Alignment:
Q  281 agagttgtcttccctattccacccatccc 309  Q
    |||||||||||||||||||||||||||||    
T  31489703 agagttgtcttccctattccacccatccc 31489675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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