View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18568_low_6 (Length: 285)

Name: NF18568_low_6
Description: NF18568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18568_low_6
NF18568_low_6
[»] chr2 (16 HSPs)
chr2 (1-144)||(10446968-10447110)
chr2 (1-184)||(10545593-10545775)
chr2 (16-184)||(10518822-10518989)
chr2 (1-193)||(10463869-10464060)
chr2 (9-142)||(10489347-10489480)
chr2 (15-184)||(10493379-10493547)
chr2 (16-184)||(10475074-10475241)
chr2 (16-184)||(10507938-10508105)
chr2 (16-158)||(7478034-7478176)
chr2 (43-193)||(28102216-28102365)
chr2 (44-184)||(10849931-10850070)
chr2 (43-193)||(27968454-27968603)
chr2 (43-193)||(28091984-28092133)
chr2 (1-153)||(10863451-10863603)
chr2 (20-184)||(7481624-7481787)
chr2 (37-118)||(6915107-6915188)
[»] chr7 (1 HSPs)
chr7 (16-139)||(15047568-15047691)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 10447110 - 10446968
Alignment:
Q  1 caaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10447110 caaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaa-ttat 10447012  T
Q  101 aaaaactgtgtctgaggtggacaacaaacttgcggaagcttttt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10447011 aaaaactgtgtctgaggtggacaacaaacttgcggaagcttttt 10446968  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10545775 - 10545593
Alignment:
Q  1 caaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttat 100  Q
    ||||||| |||||  || ||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||    
T  10545775 caaattactcaatggttgcttattgcagagaaaaggttgttgttgaagaagttcccgaagatatggaagccttggtgtcagaaaaaaggcatgaactcat 10545676  T
Q  101 aaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 184  Q
    ||||||||| || ||||| ||| | |||||||| |||||||||||||| |||||| ||||| |||||  |||||||||||||||    
T  10545675 aaaaactgtatcagaggtagacgataaacttgctgaagctttttgcagcgacaag-cccatttcagcagctgatcttgaggtgt 10545593  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 10518989 - 10518822
Alignment:
Q  16 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 115  Q
    |||||||||||||| ||||| |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  10518989 tttcttattgcagaaaaaaggttgtcgttgaagaagttcccacatatatggaagccttggtgtcagaaaaaaggcatgaactcataaaaactgtgtccga 10518890  T
Q  116 ggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 184  Q
    |||||||   |||||||| ||||||||||||| || |||| |||||||||||  |||||||| ||||||    
T  10518889 ggtggacggtaaacttgctgaagctttttgcattggcaag-cccatatcagctgctgatcttaaggtgt 10518822  T

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Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 10464060 - 10463869
Alignment:
Q  1 caaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttat 100  Q
    ||||||| |||||| ||||||||||||||  || | ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||    
T  10464060 caaattactcaattgtttcttattgcagaataatggttgtcattgaagaagttcctgcagatatggaagctttggtgttagaaaaaaggcatgaactcat 10463961  T
Q  101 aaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 193  Q
    |||||||||||| || |||||  | |||||||| || ||||||||||||| |||| |||||||||||  |||||||| |||||| | ||||||    
T  10463960 aaaaactgtgtcagacgtggatgataaacttgctgaggctttttgcagtggcaag-cccatatcagcagctgatcttcaggtgtgtgggtaac 10463869  T

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Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 10489480 - 10489347
Alignment:
Q  9 tcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactg 108  Q
    ||||||||||||||||||||||||||| |||||| |||   |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10489480 tcaattatttcttattgcagagaaaagcttgtcgctgagctagttcctggatatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactg 10489381  T
Q  109 tgtctgaggtggacaacaaacttgcggaagcttt 142  Q
    |||| ||||||||| | |||||||| ||||||||    
T  10489380 tgtccgaggtggacgataaacttgctgaagcttt 10489347  T

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Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 10493547 - 10493379
Alignment:
Q  15 atttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctg 114  Q
    |||||||||||||| |||||| |||| |||||||||||||||  | |||||||| |||||||||||  |||||||| ||| ||||||||||||||||| |    
T  10493547 atttcttattgcagtgaaaaggttgttgttgaagaagttcctagaaatatggaatccttggtgtcaagaaaaaggcgtgaccttataaaaactgtgtccg 10493448  T
Q  115 aggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 184  Q
    |||||||| | |||||||| ||||||||| |||||||||| |||||| |||||  |||||||||||||||    
T  10493447 aggtggacgataaacttgctgaagcttttagcagtgacaa-tcccatctcagcagctgatcttgaggtgt 10493379  T

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Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 10475241 - 10475074
Alignment:
Q  16 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 115  Q
    |||||||||||||| ||||| || |||||||||||||||||| | |||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||    
T  10475241 tttcttattgcagacaaaaggttttcgttgaagaagttcctggatatatggaagccttggtgtcacagaaaaggcgtgaacttataaaaactgtgtccga 10475142  T
Q  116 ggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 184  Q
    ||||||| | |||||||| ||||||||  |  |||||||| ||||| |||||  |||||||||||||||    
T  10475141 ggtggacgataaacttgcagaagctttcagtggtgacaag-cccatctcagcagctgatcttgaggtgt 10475074  T

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Target: chr2; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 10508105 - 10507938
Alignment:
Q  16 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 115  Q
    |||||||||||||||||||| ||||||||| |||||||||||   ||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||    
T  10508105 tttcttattgcagagaaaaggttgtcgttggagaagttcctggctatatggacgccttggtgtcaggaaaaaggcgtgaacttataaaaactgtgtccga 10508006  T
Q  116 ggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 184  Q
    ||| ||| | |||||||| ||||||||  |  |||||||| |||||||||||  |||||||||||||||    
T  10508005 ggttgacgataaacttgctgaagctttcggtggtgacaag-cccatatcagcagctgatcttgaggtgt 10507938  T

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Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 7478034 - 7478176
Alignment:
Q  16 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 115  Q
    ||||||||||||||||||||  |  |||||||||||||||| ||  |||||||| ||||||||||  |||||||| ||| ||||||||||||||||| ||    
T  7478034 tttcttattgcagagaaaaggctaccgttgaagaagttccttcatgtatggaagtcttggtgtcaagaaaaaggcgtgaccttataaaaactgtgtccga 7478133  T
Q  116 ggtggacaacaaacttgcggaagctttttgcagtgacaagtcc 158  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  7478134 ggtggacaataaacttgctgaagctttttgcagtgacaagtcc 7478176  T

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Target: chr2; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 28102216 - 28102365
Alignment:
Q  43 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 142  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  28102216 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 28102315  T
Q  143 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 193  Q
    ||||||||| ||| |||||||||||  ||||||||||||||| ||| ||||    
T  28102316 ttgcagtgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 28102365  T

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Target: chr2; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 10850070 - 10849931
Alignment:
Q  44 tgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttt 143  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||| ||| || ||| |||||||||||||||||||| | |||||||| |||||||||    
T  10850070 tgaagaagttcctgaagatatggaagacttcgtgtcagaaaaaaggcgtgagctcatacaaactgtgtctgaggtggacgataaacttgctgaagctttt 10849971  T
Q  144 tgcagtgacaagtcccatatcagcctctgatcttgaggtgt 184  Q
     || |||||||| |||||||||||  |||||||||||||||    
T  10849970 cgctgtgacaag-cccatatcagcacctgatcttgaggtgt 10849931  T

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Target: chr2; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 27968603 - 27968454
Alignment:
Q  43 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 142  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  27968603 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 27968504  T
Q  143 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 193  Q
    |||||| || ||| |||||||||||  ||||||||||||||| ||| ||||    
T  27968503 ttgcagcgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 27968454  T

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Target: chr2; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 28091984 - 28092133
Alignment:
Q  43 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 142  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  28091984 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 28092083  T
Q  143 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 193  Q
    |||||| || ||| |||||||||||  ||||||||||||||| ||| ||||    
T  28092084 ttgcagcgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 28092133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 10863603 - 10863451
Alignment:
Q  1 caaattattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttat 100  Q
    ||||||| |||||| ||||| |||||||||||||| || ||||||| |||||||||||| |||||||||||| |||||| |||||||| || ||||| ||    
T  10863603 caaattactcaattgtttctgattgcagagaaaaggttttcgttgaggaagttcctgcacatatggaagcctcggtgtctgaaaaaagacaggaactcat 10863504  T
Q  101 aaaaactgtgtctgaggtggacaacaaacttgcggaagctttttgcagtgaca 153  Q
    | |||| ||||| ||||||||  | |||||||| |||||| ||| ||||||||    
T  10863503 agaaaccgtgtcagaggtggatgataaacttgctgaagctctttccagtgaca 10863451  T

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Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 7481624 - 7481787
Alignment:
Q  20 ttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtg 119  Q
    ||||||||||||||||  |   |||||||||||||||||   |||||||||||||||||||  |||||||| ||| |||||| |||||||| | ||||      
T  7481624 ttattgcagagaaaaggctactgttgaagaagttcctgcgtgtatggaagccttggtgtcaagaaaaaggcgtgaccttatagaaactgtgcccgaggct 7481723  T
Q  120 gacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 184  Q
    ||| | |||||||| ||||||||| ||||||||||| ||||| |||||| |||||||||||||||    
T  7481724 gacgataaacttgctgaagcttttagcagtgacaag-cccatctcagccgctgatcttgaggtgt 7481787  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 6915107 - 6915188
Alignment:
Q  37 ttgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggt 118  Q
    |||| |||| |||||| ||||||||||||||||| |||||  |||| ||||| | |||||| ||| |||||||||| |||||    
T  6915107 ttgttgttggagaagtgcctgcagatatggaagctttggtagcagagaaaagacgtgaactcatagaaactgtgtcagaggt 6915188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 15047691 - 15047568
Alignment:
Q  16 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 115  Q
    |||||||||| ||||||||  ||  | |||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| ||| |||||||||| ||    
T  15047691 tttcttattgtagagaaaaacttaccattgaagaagtgccttcagatatggaagccttggtggcagaaaaaagacatgaactaatagaaactgtgtcaga 15047592  T
Q  116 ggtggacaacaaacttgcggaagc 139  Q
    ||| ||  | | ||||||||||||    
T  15047591 ggttgatgatatacttgcggaagc 15047568  T

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