View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_high_1 (Length: 609)
Name: NF18569_high_1
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Original strand, 37602710 - 37603285
Alignment:
| Q |
19 |
gagttaaaagcaacatccatttcctttcaaaatccaacacttttcaacacacaccaaaacactcctcctcttcctgaaccagaagaactcaaaggttgtc |
118 |
Q |
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| T |
37602710 |
gagttaaaagcaacatccatttcctttcaaaatccaacacttttcaacacacaccaaaacactcctcctcttcctgaaccagaagaactcaaaggttgtc |
37602809 |
T |
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| Q |
119 |
ttggaagcttagatggagcatgtattgaaaagctcttacttcattgtgcaagtgctttggaaagcaatgatataaccttagctcaacaagttatgtgggt |
218 |
Q |
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| T |
37602810 |
ttggaagcttagatggagcatgtattgaaaagctcttacttcattgtgcaagtgctttggaaagcaatgatataaccttagctcaacaagttatgtgggt |
37602909 |
T |
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| Q |
219 |
cttaaacaacgttgcttcaccattaggtgacacaaaccaaagactcacttcatggtttctgagagcattaatctctagagcttcaaggatttgtcctact |
318 |
Q |
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| T |
37602910 |
cttaaacaacgttgcttcaccattaggtgacactaaccaaagactcacttcctggtttctaagagcattaatctctagagcttcaaggatttgtcctact |
37603009 |
T |
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| Q |
319 |
tcaatgaatttcaaaggaagtaactacacaattcaaagaaggttgatgtccgttaccgaactcgccgggtatgttgatttaattccttggcataggtttg |
418 |
Q |
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| T |
37603010 |
tcaatgaatttcaaaggaagtaactacacaattcaaagaagattgatgtccgttaccgaactcgccgggtatgttgatttaattccttggcataggtttg |
37603109 |
T |
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| Q |
419 |
gtttttgtgcttccaacaatgaaattttcaagtcaattaagggattcaaaagggtacatattttagattttagcataacaccttgtatgcaatggcctac |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37603110 |
gtttttgtgcttccaacaatgaaattttcaagtcaattaagggattcaaaagggtacatattttagattttagcataacaccttgtatgcaatggcctac |
37603209 |
T |
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| Q |
519 |
ttttatagattctttggctaaattaccagaaggccctccttcacttagaatcacagttccatcttttaggcctatg |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37603210 |
ttttatagattctttggctaaattaccagaaggccctccttcacttagaatcacagttccatcttttaggcctatg |
37603285 |
T |
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