View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_high_3 (Length: 473)
Name: NF18569_high_3
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 40514895 - 40515363
Alignment:
| Q |
1 |
atcaaagttattaccgatcagtttgacttatagtatgaaatatgaatcatgattgacaactgtgtaaatcataaccaattgactttaaattttttacacc |
100 |
Q |
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| T |
40514895 |
atcaaagttattaccgatcagtttgacttatagtatgaaatatgaatcatgattgacaactgtgtaaatcataaccaattgactttaaattttttacacc |
40514994 |
T |
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| Q |
101 |
atcaatctatatgcattactccaattgttatcattctcattatatttatgatgataatgatgaatacatgtcaatacattatagtagtacttgataaata |
200 |
Q |
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| T |
40514995 |
atcaatctatatgaattactccaattgttatcattctcattatatttatgatgataatgatgaatacatgtcaatgcattatagtagtacttgataaatg |
40515094 |
T |
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| Q |
201 |
tactctcnnnnnnnnntatatatataggttgacaccctttaattgtacacaccatttaactttcacatacatttgtgacaagtgtcatcttttctcttta |
300 |
Q |
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| T |
40515095 |
tactttcaaaaaa---tatatacataggttgacaccctttaattgtacacaccatttaaccttcacatacatttatgataagtgtcatcttttct-ttta |
40515190 |
T |
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| Q |
301 |
acacacattttagccctttaattataaggaaaatttatgttgtagaagtgtgtgcaagggtggtataccacctaagaatgtcaatctatcaccggttaca |
400 |
Q |
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| T |
40515191 |
acacgcattttaaccctttaattataaggaaaatttatgttgtagaagtgtgtgcaagggtgatatgccacctaaggatgtcaatctatcaccagttaca |
40515290 |
T |
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| Q |
401 |
ttctttctatcttttatatagttttaatctgaatgtaatgattaaattgatgattaaaaaataaatgttattt |
473 |
Q |
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| T |
40515291 |
ttttttctatcttttataaagttttaatccgagtgtaatgattaaattgatgattaaaaaataaatgttattt |
40515363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 224 - 393
Target Start/End: Complemental strand, 130213 - 130045
Alignment:
| Q |
224 |
ataggttgacaccctttaattgtacacaccatttaactttcacatacatttgtgacaagtgtcatcttttctctttaacacacattttagccctttaatt |
323 |
Q |
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|||| ||||||| |||||||||| | || |||||| | |||| |||||||||||||||||| |||||| ||||||| | | ||||| ||||||||| |
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| T |
130213 |
atagattgacactctttaattgtgaatactttttaacctccacacacatttgtgacaagtgtcctcttttttctttaat-cgccttttaaacctttaatt |
130115 |
T |
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| Q |
324 |
ataaggaaaatttatgttgtagaagtgtgtgcaagggtggtataccacctaagaatgtcaatctatcacc |
393 |
Q |
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| T |
130114 |
ataagaaaactttgtgttgtggaagtgtgtacaagggtgatatgccacctaagaatatcgacctatcacc |
130045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 7012211 - 7012114
Alignment:
| Q |
295 |
tctttaacacacattttagccctttaattataaggaaaatttatgttgtagaagtgtgtgcaagggtggtataccacctaagaatgtcaatctatcacc |
393 |
Q |
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| T |
7012211 |
tctttaacacgccttttaaccctttaattataaagaaaatttgcgttgtggaagtgtgtacaa-ggtggtatgctacctatgggtgtcaacctatcacc |
7012114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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