View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_high_7 (Length: 329)
Name: NF18569_high_7
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 36056149 - 36055853
Alignment:
| Q |
16 |
atccaccaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacacaaattacaatcttcttatcaatacaaacattc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056149 |
atccaccaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacacaaattacaatcttcttatcaatacaaacattc |
36056050 |
T |
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| Q |
116 |
agaacaggtgatttaaacccttcattttcaccactgcatttaatcaaaatatcatgcataattccactctcacaaaacttagccttagttgtgtaataaa |
215 |
Q |
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| T |
36056049 |
agaacaggtgatttaaacccttcattttcaccactgcatttaatcaaaatatcatgcataattccactctcacaaaacttagccttagttgtgtaataaa |
36055950 |
T |
|
| Q |
216 |
gtgtgttacctgaaaaatattcacttcttgaaaaaagtgaaactttatccataagggtccnnnnnnnaaacttctttggtaaattttcttcatttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
36055949 |
gtgtgttacctgaaaaatattcacttcttgaaaaaagtgaaactttatccataagggtcctttttttaagcttctttggtaaattttcttcatttat |
36055853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 20085443 - 20085528
Alignment:
| Q |
20 |
accaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacacaaattacaatcttcttatcaat |
105 |
Q |
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||||| || |||||||||||||| |||||||| || ||||||||||| | ||| |||||||||| ||| ||| ||||||||||||| |
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| T |
20085443 |
accaataaaccatcaacaaaaatggtttgattccctctaaaattccattgcaatctcttcacacgaatcacattcttcttatcaat |
20085528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 42021596 - 42021508
Alignment:
| Q |
14 |
atatccaccaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacacaaattacaatcttcttatc |
102 |
Q |
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|||||||| | ||| ||||| ||||||||||||||||| || | ||||||||||||||| |||||||| || |||||||||||||| |
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| T |
42021596 |
atatccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatc |
42021508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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