View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18569_high_8 (Length: 314)

Name: NF18569_high_8
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18569_high_8
NF18569_high_8
[»] chr6 (2 HSPs)
chr6 (1-209)||(31126437-31126653)
chr6 (14-68)||(1177517-1177571)
[»] chr7 (3 HSPs)
chr7 (5-68)||(31443549-31443612)
chr7 (21-68)||(4173732-4173779)
chr7 (1-46)||(28036965-28037010)
[»] chr2 (1 HSPs)
chr2 (20-68)||(20378811-20378859)
[»] chr8 (2 HSPs)
chr8 (5-68)||(26136382-26136445)
chr8 (5-81)||(23540511-23540589)
[»] chr5 (2 HSPs)
chr5 (5-68)||(23210380-23210443)
chr5 (12-66)||(20064750-20064804)
[»] chr3 (2 HSPs)
chr3 (20-66)||(9033778-9033824)
chr3 (11-68)||(29614882-29614939)
[»] chr1 (1 HSPs)
chr1 (5-51)||(33379609-33379655)
[»] scaffold0555 (1 HSPs)
scaffold0555 (20-68)||(5973-6021)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 31126437 - 31126653
Alignment:
Q  1 catatcctaagatatctgatttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa--caccagtaaacaattgcacacccttattta 98  Q
    ||||||||| ||| |||| |||| ||||||||||||||||||||| || || ||||||||||||||||  |||  |||||||||||||||||||||||||    
T  31126437 catatcctaggatctctggtttgatccttcttgttataatcaaaatcagtctgtatttatttaccaaaaacactggtaaacaattgcacacccttattta 31126536  T
Q  99 ttgttgtt------tctgacattttatgcttcttatacttgtgcctctgatattattttgtattatgctttgttaactttttgctcatatatgcttagaa 192  Q
    ||||||||      |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||    
T  31126537 ttgttgtttatgtttctgacattttatgcttcttatacctgtgcctctgatattattttgtgttatgctctgttaactttttgctcatatatgcatagaa 31126636  T
Q  193 atattcatgttgttatc 209  Q
    ||||||||| |||||||    
T  31126637 atattcatgctgttatc 31126653  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 1177517 - 1177571
Alignment:
Q  14 atctgatttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa 68  Q
    ||||| ||||||||||||| ||||||||||||||| || |||||| |||||||||    
T  1177517 atctggtttggtccttcttattataatcaaaaccagtcagtatttgtttaccaaa 1177571  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 31443549 - 31443612
Alignment:
Q  5 tcctaagatatctgatttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa 68  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  31443549 tcctaggatctctgatttggtccttcttgttataatcaaaaccagtcggtatttgtttaccaaa 31443612  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 4173732 - 4173779
Alignment:
Q  21 ttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa 68  Q
    |||||||||||||||||||| || |||| ||||||||| |||||||||    
T  4173732 ttggtccttcttgttataataaacaccagtcggtatttgtttaccaaa 4173779  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28037010 - 28036965
Alignment:
Q  1 catatcctaagatatctgatttggtccttcttgttataatcaaaac 46  Q
    ||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  28037010 catatcctaagatttctgatttgatcctacttgtaataatcaaaac 28036965  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 20378859 - 20378811
Alignment:
Q  20 tttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa 68  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  20378859 tttggtccttcctgttataatcaaaaccaatcggtatttgtttaccaaa 20378811  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 26136382 - 26136445
Alignment:
Q  5 tcctaagatatctgatttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa 68  Q
    ||||| ||| |||| ||||||||| |||||||||||||||| || ||||||||| |||||||||    
T  26136382 tcctaggatctctggtttggtcctgcttgttataatcaaaatcagtcggtatttgtttaccaaa 26136445  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 23540511 - 23540589
Alignment:
Q  5 tcctaagatatctgatttggtccttcttgttataatcaaaaccaatcggtatttatttacc--aaacaccagtaaacaa 81  Q
    ||||| ||| |||| ||||||||||| ||||||||| |||| || || |||||| ||||||  ||||||||||||||||    
T  23540511 tcctaggatctctggtttggtccttcatgttataatgaaaatcagtcagtatttgtttaccaaaaacaccagtaaacaa 23540589  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 23210380 - 23210443
Alignment:
Q  5 tcctaagatatctgatttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa 68  Q
    ||||| ||| |||| ||| |||||||||||||||||||||| || ||||||||| |||||||||    
T  23210380 tcctaggatctctggtttcgtccttcttgttataatcaaaatcagtcggtatttgtttaccaaa 23210443  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 20064750 - 20064804
Alignment:
Q  12 atatctgatttggtccttcttgttataatcaaaaccaatcggtatttatttacca 66  Q
    ||||||| ||| ||||||||||||||||||| ||||| ||||||||| |||||||    
T  20064750 atatctggttttgtccttcttgttataatcacaaccagtcggtatttgtttacca 20064804  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 9033778 - 9033824
Alignment:
Q  20 tttggtccttcttgttataatcaaaaccaatcggtatttatttacca 66  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||    
T  9033778 tttggttcttcttgttataatcaaaaccagtcagtatttatttacca 9033824  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 29614882 - 29614939
Alignment:
Q  11 gatatctgatttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa 68  Q
    ||||| || ||||||||| |||||||||||||||| || || |||||| |||||||||    
T  29614882 gatatttggtttggtcctgcttgttataatcaaaagcagtcagtatttgtttaccaaa 29614939  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 33379609 - 33379655
Alignment:
Q  5 tcctaagatatctgatttggtccttcttgttataatcaaaaccaatc 51  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| ||||    
T  33379609 tcctaagatttctgatttggtcctgcttgtaataatcaaaactaatc 33379655  T

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Target: scaffold0555 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 5973 - 6021
Alignment:
Q  20 tttggtccttcttgttataatcaaaaccaatcggtatttatttaccaaa 68  Q
    |||| ||||||||||||||||||||| || ||||||||| |||| ||||    
T  5973 tttgctccttcttgttataatcaaaatcagtcggtatttgtttatcaaa 6021  T

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