View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_1 (Length: 629)
Name: NF18569_low_1
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_1 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 7906491 - 7907119
Alignment:
| Q |
1 |
gcaatattatcaacactttgtgaatcatgttcaacataagcagaattataagcattacaaaacagtttgtgcgattggcggagaaattgaagaaacaagc |
100 |
Q |
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| T |
7906491 |
gcaatattatcaacactttgtgaatcatgttcaacataagcagatttataaacatcacaaaacagtttgtgtggttggcggagaaattgaagaaacaagc |
7906590 |
T |
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| Q |
101 |
cacgattgaacgagattgttacacctctcccaaacatcgtaattcagatcatcaggaggtaagacaccgatcgttccatcaacgaaacggaatttgttat |
200 |
Q |
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| T |
7906591 |
cacgattgaacgagattgttacacagctcccaaacatcgtaattcagatcatcaggaggtaagataccgatcgttccatcaacgaaatggaatttgttct |
7906690 |
T |
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| Q |
201 |
tgagaatcaacacgcgtttcatcgaccgtgcccaaacatgatagtttgaatcggtgagaagtggtgtgatggtaaccgatgtaggacttccacttggatg |
300 |
Q |
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| T |
7906691 |
tgagaatcaacacgcttttcatcgaccgtgcccaaacataatagtttgaatcggtgagaagtggtgtgatagtaaccgatgtaggacttccacttggatg |
7906790 |
T |
|
| Q |
301 |
aatgtaggatggtctcgcttgcaattctgagatctgattcgccatcaatggaagggcggcaacattgttgctaaccattgaagatgaagagatgcaaggt |
400 |
Q |
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| T |
7906791 |
aatgtaggatggactcgcttgcaattctgagatctgattcgccatcaatggaagggtggcgacgttgttgcgaaccattgaagatgaagggatgcaaggt |
7906890 |
T |
|
| Q |
401 |
gcaagatttcaactcctggtcttatgagctctcgaacaaattcggttactcctgctgatatacctcttggtcgaagtagcttactaggaaagccaaatga |
500 |
Q |
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| T |
7906891 |
gcaagattccaactcctggtcttatgagctctggaacaaattcggttactcctgctgatatgcctcttggtcgaagtagcttactaggaaagccaaatga |
7906990 |
T |
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| Q |
501 |
ttgtttgcaaggtatcaaattccgattcctagtttcatgagctatggaacaactgcggatatgcctcttgatcgaagtagcttacttggaagacaaaatg |
600 |
Q |
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| T |
7906991 |
gtgtttgcaaggtatcaaattccgattcctagtttcatgagctatggaacaactgctgatatgcctcttggtcgaagtagcttacttggaagacaaaatg |
7907090 |
T |
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| Q |
601 |
atgtctttgcaaggtgcgaaattctgatt |
629 |
Q |
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| T |
7907091 |
atgtctttgcaaggtgcgaaattctgatt |
7907119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 393 - 629
Target Start/End: Original strand, 7896486 - 7896723
Alignment:
| Q |
393 |
tgcaaggtgcaagatttcaactcctggtcttatgagctctcgaacaaattcggttactcctgctgatatacctcttggtcgaagtagcttactaggaaag |
492 |
Q |
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| T |
7896486 |
tgcaaggtgcaaaattccaagtcctggtcttatgagctctggaacaaatttggttactcctgctgatatgcctcttggtcgaagtagcttactgggaaag |
7896585 |
T |
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| Q |
493 |
ccaaatgat-tgtttgcaaggtatcaaattccgattcctagtttcatgagctatggaacaactgcggatatgcctcttgatcgaagtagcttacttggaa |
591 |
Q |
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| T |
7896586 |
ccaaatgatgtcttcgcaaggtgtcaaattccgtttccgggtttcattagctatggaacaactgttgatatgcctcttggtcgaagtagcttacatggaa |
7896685 |
T |
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| Q |
592 |
gacaaaatgatgtctttgcaaggtgcgaaattctgatt |
629 |
Q |
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| T |
7896686 |
gaccaaatgatgtctttgcaaggtgcgaaattctgatt |
7896723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 434 - 616
Target Start/End: Original strand, 7896413 - 7896608
Alignment:
| Q |
434 |
gaacaaattcggttactcctgctgatatacctcttggtcgaagtagcttactaggaaagccaaatgat-tgtttgcaaggtatcaaattccgattcctag |
532 |
Q |
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| T |
7896413 |
gaacaagtttggttactcctgctgctgcgcctcttggacaaagtagcttactaggaaaaccaaatgatgtctttgcaaggtgcaaaattccaagtcctgg |
7896512 |
T |
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| Q |
533 |
tttcatgagctatggaacaa------------ctgcggatatgcctcttgatcgaagtagcttacttggaagacaaaatgatgtctttgcaaggtg |
616 |
Q |
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| T |
7896513 |
tcttatgagctctggaacaaatttggttactcctgctgatatgcctcttggtcgaagtagcttactgggaaagccaaatgatgtcttcgcaaggtg |
7896608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 575 - 624
Target Start/End: Original strand, 7896453 - 7896502
Alignment:
| Q |
575 |
aagtagcttacttggaagacaaaatgatgtctttgcaaggtgcgaaattc |
624 |
Q |
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| T |
7896453 |
aagtagcttactaggaaaaccaaatgatgtctttgcaaggtgcaaaattc |
7896502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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