View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_11 (Length: 311)
Name: NF18569_low_11
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 2282044 - 2281765
Alignment:
| Q |
19 |
agaacttccaaaggcaacaatagaattcttgacaagggaattgagtttgatcaagttgatagagaaaaagattggttagttagttaaatttatgcatcat |
118 |
Q |
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| T |
2282044 |
agaacttccaaaggcaacaatagaattcttgacaagggaattgagtttgatcaagttgatagagaaaaagattggttagttagttaaatttatgcatcat |
2281945 |
T |
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| Q |
119 |
ccatgcatctaacctccaaccctccttaaatcattttattaagtttaatttagtactattaatactcaattcataactattcaattgatagaaataattt |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2281944 |
ccatgcatctaacctcgaaccctccttaaatcattttatcaagtttaatttagtactattaatactcaattcataactattcaattgatagaaataatgt |
2281845 |
T |
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| Q |
219 |
ttatnnnnnnnnnngtgagagaaatatcaatgttcttcgataagtggtggaggtagtttaatttttagggataaacatatt |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2281844 |
ttat-aaaaaaaaagtgagagaaatatcaatgttcttcgataagtggtggaggtagtttaatttttagggttaaacatatt |
2281765 |
T |
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