View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_14 (Length: 290)
Name: NF18569_low_14
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 9444913 - 9444643
Alignment:
| Q |
19 |
ttacagtagacgtcgtaacactgaatctcgctagtagggtccttgaggtagcaataatcacaacgacaagaggcttgcatccaggaaatttcaaatccat |
118 |
Q |
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| T |
9444913 |
ttacagtagaagtcgtaacactgaatctcgctagtagggtccttgaggtagcaataatcacaacgacaagaggcttgcatccaggaaatttcaaatccat |
9444814 |
T |
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| Q |
119 |
agcctagtgccttatgaatatctatgtatgaaacgttgcctataaaagaaataatatttacacacnnnnnnntctacacggtatataataatcatcaaat |
218 |
Q |
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| T |
9444813 |
agcctagtgccttatgaatatctatgtatgaaacgttgcctataaaagaaataatatttacacacaaaaaaatctacacagtatataataatcatcaaat |
9444714 |
T |
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| Q |
219 |
aaaaatacatttgagttcaaacattgatttggttca-ttnnnnnnnngaaatattgatttttgtacctata |
288 |
Q |
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| T |
9444713 |
aaaaatacatttgagttcaaacattgatttggttcatttaaaaaaaagaaatattgatttttgtacctata |
9444643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 9425488 - 9425356
Alignment:
| Q |
30 |
gtcgtaacactgaatctcgctagtagggtccttgaggtagcaataatcacaacgacaagaggcttgcatccaggaaatttcaaatccatagcctagtgcc |
129 |
Q |
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| T |
9425488 |
gtcgtaacacagaatgtcgccggcagggtccttgaggtagcaatgatcacaaggacaaaaggctagtatccaggaaatttcaaatccatagcctagtgcc |
9425389 |
T |
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| Q |
130 |
ttatgaatatctatgtatgaaacgttgcctata |
162 |
Q |
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| T |
9425388 |
ttatgaatatcgatgtatgacacattgcctata |
9425356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 9412592 - 9412720
Alignment:
| Q |
32 |
cgtaacactgaatctcgctagtagggtccttgaggtagcaataatcacaacgacaagaggcttgcatccaggaaatttcaaatccatagcctagtgcctt |
131 |
Q |
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||||||| |||||||||| | ||| ||| |||||| |||| | ||||||| |||||||||||| |||| | ||||||||||||||||||| || ||||| |
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| T |
9412592 |
cgtaacattgaatctcgccaatagtgtcgttgaggaagcattgatcacaaggacaagaggctttcatcgaagaaatttcaaatccatagcttaacgcctt |
9412691 |
T |
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| Q |
132 |
atgaatatctatgtatgaaacgttgccta |
160 |
Q |
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| T |
9412692 |
gtgaatatcaatatacgaaacgttaccta |
9412720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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