View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_15 (Length: 281)
Name: NF18569_low_15
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 5110923 - 5111173
Alignment:
| Q |
16 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
115 |
Q |
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| T |
5110923 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttc |
5111022 |
T |
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| Q |
116 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctc |
215 |
Q |
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| T |
5111023 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcctc |
5111122 |
T |
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| Q |
216 |
aactgggaaatctttctttccttgttgttcttgatttacaaggcaatagtt |
266 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5111123 |
aattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtt |
5111173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 5093924 - 5094170
Alignment:
| Q |
20 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
119 |
Q |
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| T |
5093924 |
gatgaattttcacttcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgtctt |
5094023 |
T |
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| Q |
120 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaact |
219 |
Q |
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| T |
5094024 |
catgcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcctcaatt |
5094123 |
T |
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| Q |
220 |
gggaaatctttctttccttgttgttcttgatttacaaggcaatagtt |
266 |
Q |
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| T |
5094124 |
gggaaatctttctttccttattgttcttgatttacagggcaatagtt |
5094170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 5084148 - 5083898
Alignment:
| Q |
16 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |
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| T |
5084148 |
cacagatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatatgcttagaaattggtcaatttcctcttctacttcttctttc |
5084049 |
T |
|
| Q |
116 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
5084048 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctc |
5083949 |
T |
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| Q |
216 |
aactgggaaatctttctttccttgttgttcttgatttacaaggcaatagtt |
266 |
Q |
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|| |||||||||| ||||||||||| |||||||| ||||||| ||||||| |
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| T |
5083948 |
aattgggaaatctctctttccttgtatttcttgatctacaaggaaatagtt |
5083898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 14427926 - 14427680
Alignment:
| Q |
20 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
119 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
14427926 |
gatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttctttctctt |
14427827 |
T |
|
| Q |
120 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaact |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | |
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| T |
14427826 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaatt |
14427727 |
T |
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| Q |
220 |
gggaaatctttctttccttgttgttcttgatttacaaggcaatagtt |
266 |
Q |
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|||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
14427726 |
aggaaatctctctttccttgttgttcttgatctacatggcaatagtt |
14427680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 16872369 - 16872553
Alignment:
| Q |
19 |
agatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaat---tggtcaatttcatcttctacttcttctttg |
115 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||| | |
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| T |
16872369 |
agatgaattttcacttcttgcattcaaatcctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttctacttctt---tc |
16872465 |
T |
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| Q |
116 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggta |
203 |
Q |
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|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |
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| T |
16872466 |
tcatcatgtaattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 16873359 - 16873430
Alignment:
| Q |
195 |
ttgaaggtacaatttctcctcaactgggaaatctttctttccttgttgttcttgatttacaaggcaatagtt |
266 |
Q |
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|||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtt |
16873430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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