View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_16 (Length: 272)
Name: NF18569_low_16
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 47552772 - 47552540
Alignment:
| Q |
22 |
atgcattataacgtgctaatctactcttttcccaccttccaaaaataacggaactcattatctttattacaaaattattcaaattgaaaattacttgnnn |
121 |
Q |
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| T |
47552772 |
atgcattataacgtgctaatctactcttttcccaccttccaaaaataacggaactcattatctttattacaaaattattgaaattgaaaattacttg-tt |
47552674 |
T |
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| Q |
122 |
nnnnnataaggagcacaaagaaagaagaagattaaatttaaagatagatacatactcatttattcttaaagac----nnnnnnnnagtacaagacgactt |
217 |
Q |
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| T |
47552673 |
ttttgataaggagcacaaagaaagaagaag---aagattaaagatagatacatactcatctattcttaaagacttttttttttttagtacaagacgactt |
47552577 |
T |
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| Q |
218 |
ttaattataaacaaaactatgatgatctacatacatg |
254 |
Q |
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| T |
47552576 |
ttaattataaacaaaactatgatgatctacatacatg |
47552540 |
T |
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