View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_21 (Length: 222)
Name: NF18569_low_21
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 41744438 - 41744253
Alignment:
| Q |
22 |
cgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgatcgtaaacaagag |
121 |
Q |
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| T |
41744438 |
cgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgaccataaacaagag |
41744339 |
T |
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| Q |
122 |
taataaggagtaatgtcataaacatatatataaatacatatgatgagaaaagacgatgtctattttagggtaaacaatgagaaatg |
207 |
Q |
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| T |
41744338 |
taatgaggactaatttcataaacatatatataaatacatatgatgagaaaagacgacgtctattttagggtaaacaatgagaaatg |
41744253 |
T |
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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 18784973 - 18785090
Alignment:
| Q |
24 |
agtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgatcgtaaacaagagta |
123 |
Q |
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| T |
18784973 |
agtcgtgtttatgaaatggattaatcaagaggatagggtagtaatctaaacgtcttgatgggggaaataataaagaatttattgactataaacaagagta |
18785072 |
T |
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| Q |
124 |
ataaggagtaatgtcata |
141 |
Q |
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| T |
18785073 |
ataagaagtaatgtcata |
18785090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 34635485 - 34635625
Alignment:
| Q |
31 |
tttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggta------atgatgaagaattttatgatcgtaaacaagagtaa |
124 |
Q |
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| T |
34635485 |
tttatgaattgaattaataaaaaga-taaggtagtgatataaacttcttgatggggggaggggggatgatgaagagttttacga-ctcaatcaagagtga |
34635582 |
T |
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| Q |
125 |
taaggagtaatgtcataaacatatatataaatacatatgatga |
167 |
Q |
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| T |
34635583 |
tgaggggtaatgtcatatacttatatataaatacatatgatga |
34635625 |
T |
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