View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_3 (Length: 490)
Name: NF18569_low_3
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 4 - 473
Target Start/End: Original strand, 1555310 - 1555770
Alignment:
| Q |
4 |
atctccaagaatatgcgacatcagtttgcatattcaaacactgctatacaagctaaagcttactaaccctgaatcttgttataacttataaataaaacct |
103 |
Q |
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| T |
1555310 |
atctccaacattatgcgacatcagtttgcatattcaaacactgctatacaagctaaagcttactaaccctgaatcttgttataacttataaataaaacct |
1555409 |
T |
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| Q |
104 |
tnnnnnnn-tgacaatataatatgtgctgcacaaagcatggctggaaagacaactcgagggtattgcagatgttggaaagatgatcattgctggaaagac |
202 |
Q |
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| T |
1555410 |
taaaaaaaatgacaatataatatgtgctgcacaaagcaaggctggaaagacaactccagggtattgcagatgttggaaagatgatcattactggaaagac |
1555509 |
T |
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| Q |
203 |
aactcagcaagatggtaagaatgacaactagtttggatgttctataaccaaggaagaaaaagatttgtttgaatgatcatcagcaaaaatattttggcaa |
302 |
Q |
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| T |
1555510 |
aactcagcaagatggtaagaatgacaactagtttggatgttctataaccaaggaagaaaaagatttgtttgaatgatcatcagcaaaaatattttggcaa |
1555609 |
T |
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| Q |
303 |
gcaatatcaatttacgcacaaaaagaactaaaacttctttaaattgaccaagaacaatatttcaaatatatcaatatgattcacaacgagaagctggtac |
402 |
Q |
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| T |
1555610 |
gcaatatcaatttacgcacaaaaagaactaaaacttctttaaattgaccaagaacaatatttcaaatata----------tcacaacgagaagctggtac |
1555699 |
T |
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| Q |
403 |
aatcattgtttattaatcagtaacatggaatgatcatagtccaacagagaaagcaaaaggctactaaaagg |
473 |
Q |
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| T |
1555700 |
aatcattgtttattaatcagtaacatggaatgatcatagtctaacagagaaagcaaaaggctactaaaagg |
1555770 |
T |
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