View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_5 (Length: 386)
Name: NF18569_low_5
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_5 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0171 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 386
Target Start/End: Complemental strand, 24940507 - 24940134
Alignment:
| Q |
12 |
aagtatataatatgtacattgaacaaaatgcaatactgagaaattagttgaatcacaacacaagagcaatttatgcttgaccaaatcgatcatattcaca |
111 |
Q |
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| T |
24940507 |
aagtatataatatgtacattgaacaaaatgcaatactcagaaattagttgaatcacaacaaaagagcaatttatgcttggccaaatcgatcatattcata |
24940408 |
T |
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| Q |
112 |
tttgactgtgattcttcgtaatattaaaaaattgcagtacaaccgcaatcgttcctgcatctatgcgctattctaaatttcattcttaagtaacgtgact |
211 |
Q |
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| T |
24940407 |
tttgactgtgattcttcataatattcaaaaattgcagtacaaccgcaatcgttcctgcaactacgcgctattctaaacttcgttcttaagtaacatgact |
24940308 |
T |
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| Q |
212 |
taaaacgtcgcaattcttgatttctaattgtattacgttcgctatatttttaatgaataatatggaatttagatgacttaccaagatgaaagccttgaca |
311 |
Q |
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| T |
24940307 |
tgaaacgtcataattcttgatttttaattgtattgcattcgctat-tttttaacgaataatatggaatttagatgacttaccaagatgaaagccttgaca |
24940209 |
T |
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| Q |
312 |
ttctcactggtcaatttgatttcattgctctcatcttcttgtatttccaacaatatatcaagtagatccctaaca |
386 |
Q |
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| T |
24940208 |
ttctcactggtcaatttgatttcattgctctcatcttcttgtatttccaacaatatatcaagtagatccctaaca |
24940134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 25168857 - 25168753
Alignment:
| Q |
282 |
agatgacttaccaagatgaaagccttgacattctcactggtcaatttgatttcattgctctcatcttcttgtatttccaacaatatatcaagtagatccc |
381 |
Q |
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| T |
25168857 |
agatgacttaccaagatgaacgcgttgacattctcactagtcaatttgatttcattgctctcatcctcttgtatttccaacaaaatatcaagtaaatccc |
25168758 |
T |
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| Q |
382 |
taaca |
386 |
Q |
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||||| |
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| T |
25168757 |
taaca |
25168753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 386
Target Start/End: Original strand, 38808541 - 38808639
Alignment:
| Q |
288 |
cttaccaagatgaaagccttgacattctcactggtcaatttgatttcattgctctcatcttcttgtatttccaa-caatatatcaagtagatccctaaca |
386 |
Q |
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| T |
38808541 |
cttacaaagatgaaatacttgacattctctctggttaattttatct-agtgctctcatcctatagtatttccaaccaaaatatcaagcagatccctaaca |
38808639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 386
Target Start/End: Complemental strand, 24683 - 24585
Alignment:
| Q |
288 |
cttaccaagatgaaagccttgacattctcactggtcaatttgatttcattgctctcatcttcttgtatttccaacaatatatcaagtagatccctaaca |
386 |
Q |
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||||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| || ||||||||||| |||||||| | |||| ||||| |
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| T |
24683 |
cttacaaagatgaaagccttgacattctttctggtcaattttatttcactgctctcatcttcatgaatttccaacaaaatatcaagcaaatccttaaca |
24585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 386
Target Start/End: Complemental strand, 19274 - 19176
Alignment:
| Q |
288 |
cttaccaagatgaaagccttgacattctcactggtcaatttgatttcattgctctcatcttcttgtatttccaacaatatatcaagtagatccctaaca |
386 |
Q |
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| T |
19274 |
cttaccaagattaaagctttgacattctctcttgtcaattttatttctgtgttctcattctcatgcatttctaacaaaatatcaagtagatccctaaca |
19176 |
T |
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