View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_6 (Length: 382)
Name: NF18569_low_6
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 372
Target Start/End: Complemental strand, 50039332 - 50038945
Alignment:
| Q |
5 |
tgtattgatatttgtattttgttatagagaatgcagtatgtttttaaggtaaatgtcaataaatagaaaa-tctaataagttcttggaaagcacttgtca |
103 |
Q |
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| T |
50039332 |
tgtattgatatttgtattttgttatagagaatgcagtatctttttaaggtaaatgtcaataaatagaaaaatctaataagttcttggaaagcacttgtca |
50039233 |
T |
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| Q |
104 |
agacatctaatatagtcataattcattggaacttagtaatcaatagttttaaagtttataaatgcnnnnnnnngttacattataaatgcttcttttaaaa |
203 |
Q |
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| T |
50039232 |
agacatctaatatagtcataattcattggaacttagtaatcaatagttttaaagtttataaatgcttttttttgttacattataaatgcttcttttaaaa |
50039133 |
T |
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| Q |
204 |
ca---------------aattttttaacaagtactact-----attatataaacaattgctaacagcatctttaatggaattgttctaattaatggagac |
283 |
Q |
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|| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50039132 |
caaaattttcaatttttaaatttttaacaagtactactactccattatataaacaattgctaacagcatctttaatggaattg---taattaatggagac |
50039036 |
T |
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| Q |
284 |
ttttatttagaatgaaaagc-nnnnnnnnnggagtatc-nnnnnnnnnaaaaggaaaaaaggagtgtctatatcaaacaccaaactctgtg |
372 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50039035 |
ttttatttagaatgaaaagcaaaaaaaaaaggagtatcttttttttttaaaaggaaaaaaggagtgtctatatcaaacaccaaactctgtg |
50038945 |
T |
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