View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_7 (Length: 369)
Name: NF18569_low_7
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 18298071 - 18297719
Alignment:
| Q |
1 |
tttcaactaaaccagagaacacagtaacaacccagnnnnnnntacagcaacaacccagtnnnnnnnngtttcatcttaatctctctcatcaacacaaaca |
100 |
Q |
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| T |
18298071 |
tttcaactaaaccagaaaacacagtaacaatccagaaaaaaatacagcaacaacccagtaacaaaaagtttcatcttaatctctctcatcaacacaaaca |
18297972 |
T |
|
| Q |
101 |
acaaatcaatcaccattggtcccatttaaaccccaaaaaagaatagcaattatcttcaaaaatacatcaaatcaaaccttc--atcaccaacaaccacaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18297971 |
acaaatcaatcaccattggtcccatttaaaccccaaaaaagaatagcaattatcttcaaaaatacatcaaatcaaaccttctcatcaccaacaaccacaa |
18297872 |
T |
|
| Q |
199 |
caacttttgttccattccatctatctccccatcttcattttcgttttcctccaaagctcaataatttcaagttgcatagctgccgaaaaaaccccatctt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
18297871 |
caacttttgttccattccatctatctccccatcttcattttcgttttcctccaaagcccaataatttcaagctgcacagctgccgaaaaaaccccatctt |
18297772 |
T |
|
| Q |
299 |
catttttgttttcctccaaaccccatctacaataccataaaaagcaacaacag |
351 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18297771 |
cattttcgttttcctccaaaccccatctacaataccataaacagcaacaacag |
18297719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 26281009 - 26280659
Alignment:
| Q |
1 |
tttcaactaaaccagagaacacagtaacaacccagnnnnnnn-tacagcaacaacccagtnnnnnnnngtttcatcttaatctctctcatcaacacaaac |
99 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
26281009 |
tttcaactaaaccagaaaacacagtaacaacccagaaaaaaaatacagcaacaacccattaacaaaaaatttcatcttaatctctctcatcaacacaaac |
26280910 |
T |
|
| Q |
100 |
aacaaatcaatcaccattggtcccatttaaaccccaaaaaagaatagcaattatcttcaaaaatacatcaaatcaaaccttcatcaccaacaaccacaac |
199 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26280909 |
aacaaatcaatcaccattggttccatttaaacccccaaaaaaaatagcaattatcttcaaaaatacatcaaatcaaaccttcatcaccaacaaccgcaac |
26280810 |
T |
|
| Q |
200 |
aacttttgttccattccatctatctccccatcttcattttcgttttcctccaaagctcaataatttcaagttgcatagctgccgaaaaaaccccatcttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||||| ||||||| |||||| |
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| T |
26280809 |
aacttttgttccattccatctatctccccatcttcattttcgtttttctccaaaacccaataatttcaagttgcacagctgccga-aaaaccctatcttc |
26280711 |
T |
|
| Q |
300 |
atttttgttttcctccaaaccccatctacaataccataaaaagcaacaacag |
351 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
26280710 |
atttttgttttcctccaaaccccatctacagtaccataaacagcaacaacag |
26280659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 69 - 334
Target Start/End: Complemental strand, 968853 - 968587
Alignment:
| Q |
69 |
tttcatcttaatctctctcatcaacacaaacaacaaatcaatcaccattggtcccatttaaaccccaaaaaagaa-tagcaattatcttcaaaaatacat |
167 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||| |
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| T |
968853 |
tttcatcttaatctctctcatcaacacaaacaacaaatcaaccaccattggttccatttaaaccccaaaaaaaaaatagcaattatcttaaaaaatacat |
968754 |
T |
|
| Q |
168 |
caaatcaaaccttcatcaccaacaaccacaacaacttttgttccattccatctatctccccatcttcattttcgttttcctccaaagctcaataatttca |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
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| T |
968753 |
caaatcaaaccttcatcaccaacaaccacaacaacttttgttccattccatctatctccttatcttcattttcgttttcctccaaaacccaataatttca |
968654 |
T |
|
| Q |
268 |
agttgcatagctgccgaaaaaaccccatcttcatttttgttttcctccaaaccccatctacaatacc |
334 |
Q |
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||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||| ||| |||| |||| |
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| T |
968653 |
agttgcacagccgccaaaaaaaccccatcttcattttcgttttcctccaaacctcatatacattacc |
968587 |
T |
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