View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18569_low_8 (Length: 331)
Name: NF18569_low_8
Description: NF18569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18569_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 43207123 - 43207427
Alignment:
| Q |
19 |
ttgatggtgatattagagtttgggaagtgtttggtttggtttaaaacttaattgattctgcttaatgcaaaccatgtccactctacccgtttgaattttt |
118 |
Q |
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| T |
43207123 |
ttgatggtgatattagagtttgggaagtgtttggtttggtttaaaacttaattgattctgcttaatgcaaaccatgtccactctacccgtttgaattttt |
43207222 |
T |
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| Q |
119 |
taaacgtggtgttaattaattaactagataagttgaaattctgacactaacgtcgtgggagtttacaaggaaaccggacgtgccaaacagagctgcagat |
218 |
Q |
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| T |
43207223 |
taaacttggtgttaattaattaaccagataagttgaaattctgacacttacgtcgtgggagtttacaaggaaaccggacgtgccaaacagagctgcagat |
43207322 |
T |
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| Q |
219 |
tcaagttaatggaggcttatatataacatatgatatatctatgcttcagctttttgtaagagcataaaatcccgtttcaaagctgattagtgctaagcct |
318 |
Q |
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| T |
43207323 |
tcaagttaatgcaggcttatatataacatatgatatatctatgcttcagctttttgtaagagcataaaatcccgtttcaaagctgattagtactaagcct |
43207422 |
T |
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| Q |
319 |
ttgct |
323 |
Q |
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||||| |
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| T |
43207423 |
ttgct |
43207427 |
T |
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