View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_high_10 (Length: 350)
Name: NF1856_high_10
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 141 - 342
Target Start/End: Original strand, 31793100 - 31793299
Alignment:
| Q |
141 |
taatatgtcttggagatacgagtcgaacatttgatagagtggtaaatagatcattttctatatacaaaagttttctttttagattgttaaaaatcaacat |
240 |
Q |
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| T |
31793100 |
taatatgtcttggagatacgagtcgaacatttgatagagtagtaaatagatcattttctata--caaaagttttctttttagattgttaaaaatcaacat |
31793197 |
T |
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| Q |
241 |
cctaaacacacttatttgtgatcaaccaaaatgaagaacttattcaacatgtatattttcaagaaacaccaacaatcatattccactacaaagagtataa |
340 |
Q |
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| T |
31793198 |
cctaaacacacttatttgtgatcaaccaaaatgaagaacttattcaacatgtatattttcaaaaaacaccaacaatcatactccactacaaaaagtataa |
31793297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 31792977 - 31793036
Alignment:
| Q |
18 |
acttgagagctgcatgtttgcacattatgcttacatgtctagaaatttgtaggacatagt |
77 |
Q |
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| T |
31792977 |
acttgagagctgcatgtttgcacattatacttacatgtctagaaatttgtaggacatagt |
31793036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 47509118 - 47509158
Alignment:
| Q |
277 |
aacttattcaacatgtatattttcaagaaacaccaacaatc |
317 |
Q |
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| T |
47509118 |
aactttttcaacatgtatattttcaaccaacaccaacaatc |
47509158 |
T |
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