View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1856_high_2 (Length: 542)
Name: NF1856_high_2
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 526
Target Start/End: Complemental strand, 55103475 - 55102962
Alignment:
| Q |
13 |
aatatcattgaatggaatgtaagaaattaccttggatcccaagagtcgaaagtttagtgctattgaagctgtaagttgttgccttttggttaaaaccagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55103475 |
aatatcattgaatggaatgtaagaaattaccttggatcccaagagtcgaaagtttagtgctattgaagctgtaagttgttgccttttggttaaaaccagg |
55103376 |
T |
|
| Q |
113 |
atgttgaacgagcacgttccagttagagtagtttctattgaagttgtagttagaaattgtaagcttgaccccccattgattcatataattgttcttgaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
55103375 |
atgttgaacgagcacgttccagttagagtagtttctattgaagttgtagttagaaattgtaagcttgatcctccattgattcatataattgttcttgaaa |
55103276 |
T |
|
| Q |
213 |
tgccaatggactcgaattggacacatgtggtcggtacattcaattatatttttctcatcatttgaccctcccagaggatcacctggcctggttacttaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55103275 |
tgccaatggactcgaattggacacatgtggtcagtacattcaattatatttttctcatcatttgaccctcccagaggatcacctggcctggttacttaat |
55103176 |
T |
|
| Q |
313 |
aattagcagtaagcacacaactgtagacatattaatgacattaatgaaaaaacacgaatgttcgagcaaatgaaataacatgcaccttatgcaagacagt |
412 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55103175 |
atttagcagtaagcacacaacagtagacatattaatgacattaatgaaaaaacacgaatgttcgagcaaatgaaataacatgcaccttatgcaagacagt |
55103076 |
T |
|
| Q |
413 |
gaatttttatttgcttccctgcatccaccacaagtgcaattacggcatggtgtgatgataggattgtaaaatgttgagaatgaaacacagcatactggtg |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55103075 |
gaatttttatttgcttccctgcatccaccacaagtgcaattacggcatggtgtgatgataggattgtaaaatgttgagaacgaaacacagcatactggtg |
55102976 |
T |
|
| Q |
513 |
acttgtttgctaag |
526 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
55102975 |
acttgtttgctaag |
55102962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University