View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_high_20 (Length: 218)
Name: NF1856_high_20
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 28926194 - 28926373
Alignment:
| Q |
26 |
atggataagcttgtgagttcatccaacaaataatataaataaaatatgatggatctatgaggctaacatgacatatgctatgtgcatcaattaaaattaa |
125 |
Q |
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| T |
28926194 |
atggataagcttgtgagttcatccaacaaataatataaataaaatatgatggatctatgaggctaacgtgacatatgctatgtgcatcaattaaaattaa |
28926293 |
T |
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| Q |
126 |
catagtatatatgtgaatatatnnnnnnncggcgtgtatgtgcgagccgctaatattcaattactaaccacataacattca |
206 |
Q |
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| T |
28926294 |
catagtatatatgtgaatatat-aagaaacggcgtgtatgtgtgagccgctaatattcaattactaaccacacaacattca |
28926373 |
T |
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