View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_high_5 (Length: 440)
Name: NF1856_high_5
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 224197 - 224624
Alignment:
| Q |
18 |
attagttaaccttgatgacaaagacactgaaatagtttcggatcatggaccttgacaaggatttttaggatgttttgttttatggagatagagatatggc |
117 |
Q |
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| T |
224197 |
attagttaaccttgatgacaaagacactgaaatagtttcggatcatggaccttgacaaggatttttaggatgttttgttttatggagatagagatatggc |
224296 |
T |
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| Q |
118 |
tttagatatgtatgtagtactaatgcagcagtgtttttgcttacaagg-----aatttgtgcatggagtgaactcagtgaagtgatagtgctcctcagca |
212 |
Q |
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| T |
224297 |
tttagatatgtatgtagtactaatgcagcagtgtttttgcttacaaggaaaggaatttgtgcatggagtgaactcagtgaagtgatagtgctcctcagca |
224396 |
T |
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| Q |
213 |
atacttgttcaaatcatctgattattttgtactattgacatcatgttaataggggattttgttcattgtataaatatatataattaaccacagtgtagtc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224397 |
atacttgttcaaatcatctgattattttgtactattgacatcatgttaataggggattttgttcattgtataaatatatataattaaccacagtgtagtc |
224496 |
T |
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| Q |
313 |
ccttttactccaatgaaatgttgtcatcatatataaaggtctatatttttcaacataatttgtcttgtacatttaatatgctttgaaaatcttcagtttg |
412 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224497 |
ccttttactccaatgaaatgtagtcatcatatataaaggtctatatttttcaacataatttgtcttgtacatttaatatgctttgaaaatcttcagtttg |
224596 |
T |
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| Q |
413 |
ctaataacctaaccaagcagatggtatt |
440 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
224597 |
ctaataacctaaccaagcagatggtatt |
224624 |
T |
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