View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_high_9 (Length: 392)
Name: NF1856_high_9
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_high_9 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 10963 - 11325
Alignment:
| Q |
20 |
aaccgaattggactgtttaaccttgaaccatcatttacaatggttcaattaatttggtggtttgattgctgtttcatcccgattcaaacagtttaacatg |
119 |
Q |
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| T |
10963 |
aaccgaattggactatttaaccttgaaccatcatttacaatggttcaattaatttggtggtttgatagctgtttcatcccgattcaaacagtttaacatg |
11062 |
T |
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| Q |
120 |
gttgaaccataacctattggtcttgccaattcaatgtctggttcaattttaaaaactttagttttaacatattaaagaagcattttactttgcttggtta |
219 |
Q |
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| T |
11063 |
gttgaaccataacctattggtcttgccaattcaatgtctggttcaattttaaaaactttggttttaacatattaaagaagcattttactttgcttggtta |
11162 |
T |
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| Q |
220 |
aaattgattttcttttttgatgagtattcatttagttgagcatgtaaaatgtagtaatatattattttgtggtagcacataaacataatgatggttacct |
319 |
Q |
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| T |
11163 |
aaattgattttcttttttgatgagtattcatttagttgagcatgtaaaatgtagtaatatattattttgtggtagcacataaacataatgatggttacct |
11262 |
T |
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| Q |
320 |
tcaacacatgcattttaaaatggtacaaggcatcaaattctctggtcttacaattgtcctttg |
382 |
Q |
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| T |
11263 |
tcaacacatgcattttaaaatggtacaaggcatcaaattctcttgtcttacaattgtcctttg |
11325 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 34436728 - 34436783
Alignment:
| Q |
120 |
gttgaaccataacctattggtcttgccaattcaatgtctggttcaattttaaaaac |
175 |
Q |
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| T |
34436728 |
gttgaaccatgacctagtggtcttgccgattcaatgtctggtttgatttttaaaac |
34436783 |
T |
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