View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_low_1 (Length: 677)
Name: NF1856_low_1
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 785383 - 784825
Alignment:
| Q |
1 |
acattatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttct |
100 |
Q |
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| T |
785383 |
acattatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttct |
785284 |
T |
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| Q |
101 |
aattttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtat |
200 |
Q |
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| T |
785283 |
aattttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtat |
785184 |
T |
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| Q |
201 |
gcataaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaatatgttgctt |
300 |
Q |
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| T |
785183 |
gcataaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaaaatgttggtt |
785084 |
T |
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| Q |
301 |
attattttatgggaaatgctaatcaaatatagcaaacacaatatacaacaaaaagtgaagtattctctgagttaaataatttatgttcttcaattcattt |
400 |
Q |
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| T |
785083 |
attattttatgggaaatgctaatcaagtatagcaaacacaatatacaacaaaaagtgaagtattctctgagttaaataatttatgttcttcaattcagtt |
784984 |
T |
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| Q |
401 |
gttcattcataaggtaaaggatgcattaataatgttttagaaatctgacatgagatcgagaagtgaaatatttatgttatggttcaagcactttatggtt |
500 |
Q |
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| T |
784983 |
gttcattcataaggtaaaggatacattaataatgttttagaaatctgacatgagatcgagaagtgaaatatttatgttatggttcaagcactttatggtt |
784884 |
T |
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| Q |
501 |
ataatagatggttgaactatgtgtgaacaatataaatatggtttgcacttgatggggag |
559 |
Q |
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| T |
784883 |
ataatagatggttgaactatgtgtgaacaatataaatatggtttgcacttgatggggag |
784825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 597 - 669
Target Start/End: Complemental strand, 784787 - 784715
Alignment:
| Q |
597 |
ttaacttggttgaactatgtgttgttcaatctcgattcaatcaagttctttcggatcattatagtataatcta |
669 |
Q |
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| T |
784787 |
ttaacttggttgaactatgtgttgttcaatctcgattcaatcaagttctttcggatcattatagtataatcta |
784715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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