View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_low_11 (Length: 319)
Name: NF1856_low_11
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 295
Target Start/End: Complemental strand, 7562308 - 7562019
Alignment:
| Q |
6 |
gtcgaagaatatggccaatgattgagaaatttagtaatttcttagatgttggtaattaagtgtttgttttgatgttgtaaaggaaattgaaagcaagaga |
105 |
Q |
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| T |
7562308 |
gtcgaagaagatggccaatgattgagaaatttagtaatttcttagatgttggtaattaagtgtttgttttgatgttgtaaaggaaattgaaagcaagaga |
7562209 |
T |
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| Q |
106 |
aatgnnnnnnnnnnnnnnnnnnngattgatgatgaatggagaaaagatacctgagatgacggataacaggggttctcaacaaaaagaaaaggaaaacatg |
205 |
Q |
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| T |
7562208 |
aatgtttttttaatttattttttgattgatgatgaatggagaaaagatacctgagatgacggataacaggggttctcaacaaaaagaaaaggaaaacatg |
7562109 |
T |
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| Q |
206 |
gttagactaaaaagtacgtaataccaaaggaaccaattattgtctttcctcaatgatctcctacaaaggaggacctctatctttctcaat |
295 |
Q |
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| T |
7562108 |
gttagactaaaaagtacgtaataccaaaggaaccaattgttgtctttcctcaatgatctcctacaaaagaggacctttatctttctcaat |
7562019 |
T |
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Back To:
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 33148838 - 33148874
Alignment:
| Q |
245 |
ttgtctttcctcaatgatctcctacaaaggaggacct |
281 |
Q |
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| T |
33148838 |
ttgtctttcctcaatggtctcctacaaaggaggacct |
33148874 |
T |
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