View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_low_12 (Length: 310)
Name: NF1856_low_12
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 52390860 - 52391070
Alignment:
| Q |
20 |
tgcagctcaatgctatactagttgctttgtttcataaacattttttaagctgtaacttgtgcaatgattcaagggtagagaaaatatatatggatgcagc |
119 |
Q |
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| T |
52390860 |
tgcatctcaatgctatactagttgctttgtttcataaacattttttaagctgtaacttttgcaatgattcaagggtagagaaaatatatatggatgcagc |
52390959 |
T |
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| Q |
120 |
taacaatattaacggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagac |
219 |
Q |
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| T |
52390960 |
taacaatattaacggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagac |
52391059 |
T |
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| Q |
220 |
acactaccaaa |
230 |
Q |
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| T |
52391060 |
acactaccaaa |
52391070 |
T |
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