View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_low_15 (Length: 265)
Name: NF1856_low_15
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 785368 - 785564
Alignment:
| Q |
1 |
ggaatgcaaataatgtcgatataaatggagagtatgatttaccaaaataataattgaaactaggagtggagggcatgactctgtttatattannnnnnnc |
100 |
Q |
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| T |
785368 |
ggaatgcaaataatgtcgatataaatggagagtatgatttaccaaaataataattgaaactaggagtggagggcatgactctgtttatattatttttttc |
785467 |
T |
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| Q |
101 |
aagaaatagactatcttttacgcgcagttgttaagattaaatctctcaagttacttaaaacaaattaaatacttcattgaaagataactttctatagt |
198 |
Q |
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| T |
785468 |
aagaaatagactatcttttacgcgcagttgttaagatt-aatctctcaagttacttaaaacaaattaaatacttcattgaaagataactttctatagt |
785564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 785582 - 785614
Alignment:
| Q |
216 |
ttacacaatcgaaagatatcttccgataaatct |
248 |
Q |
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| T |
785582 |
ttacacaatcgaaagatatcttccgataaatct |
785614 |
T |
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