View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_low_17 (Length: 227)
Name: NF1856_low_17
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31785147 - 31785354
Alignment:
| Q |
1 |
cggagaagatacaatctcaccgccagttctattgtgaaacttgttacatgtccagagcaagcttcaagtgtgcaccttccacaaaggatagttttagatt |
100 |
Q |
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| T |
31785147 |
cggagaagatacaatctcaccgccagttctattgtgaaacttgttacatgtccagagcaagcttcaagtgtgcaccttccaccaaggatagttttagatt |
31785246 |
T |
|
| Q |
101 |
gaatacccttcgatgattgttgtcttttctttttgaatgtgtaatttagctgtagcatatatatagtgaaactatcttagtctttaatccctattatttt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31785247 |
gaatacccttcggtgattgttgtcttttctttttgaatgtataatttagctgtagc----atatagtgaaactatcttagtctttaatccctattatttt |
31785342 |
T |
|
| Q |
201 |
gttaggtttctt |
212 |
Q |
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||| |||||||| |
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| T |
31785343 |
gttgggtttctt |
31785354 |
T |
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