View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_low_3 (Length: 485)
Name: NF1856_low_3
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 18320566 - 18320100
Alignment:
| Q |
1 |
gtgatcaagagataaacttgtgttggataaatcatctgcagaactattccattctctatacacatatgttacaataaaattcattcccctagtgataagc |
100 |
Q |
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| T |
18320566 |
gtgatcaagagataaacttgtgttggataaatcatctgcagaactattccattctctatacacatatgttacaataaaattcattcccctagtgataagc |
18320467 |
T |
|
| Q |
101 |
aggcagttgttccatctgttccttaaaggccaaggaatcagagatgaattcttaaagcatttaccaataaaactgaattagattctaaccaaagattgct |
200 |
Q |
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| T |
18320466 |
aggcagttgttccatctgttccttaaaggccaaggaatcagagatgaattcttaaagcatttaccaataaaactgaatcagattctaaccaaagattgct |
18320367 |
T |
|
| Q |
201 |
tcattgatgttgcttagctaactatatggctctcattgctccagatagctctgcatagaaagaatttctagcacttgtattttctgcaaagaaaagaagg |
300 |
Q |
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| T |
18320366 |
tcattgatgttgcttagctagctctatggctctcattgctctagatagctctgcatagaaagaatttctagcacttgtattttctgcaaagaaaagaagg |
18320267 |
T |
|
| Q |
301 |
agatttaagtctttatctttgaaaattcctccacaagataatgtattggtatttgctgagcaatatgtgttacatttgacccaataaaagagaggaggtt |
400 |
Q |
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| T |
18320266 |
agatttgagtctttatctctgaaaattcctccacaagataatgtattggtatttgctgagcaatatgtgttacatttgacccaatgaaagagaggaggtt |
18320167 |
T |
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| Q |
401 |
gtcatattacttcaataatcttgggtaatttaggagggtgaatgcaaatattatatttctttaaaaa |
467 |
Q |
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| T |
18320166 |
gtcatattacttcaataatcttgggtaatttaggagggtgaatgcaaatattatatttctttaaaaa |
18320100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 17556383 - 17556437
Alignment:
| Q |
281 |
tttctgcaaagaaaagaaggagatttaagtctttatctttgaaaattcctccaca |
335 |
Q |
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||||||||||| ||||||| || || ||||||||||||||||||| |||||||| |
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| T |
17556383 |
tttctgcaaagcaaagaagaagcttagagtctttatctttgaaaatacctccaca |
17556437 |
T |
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