View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_low_7 (Length: 419)
Name: NF1856_low_7
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 42647971 - 42648390
Alignment:
| Q |
16 |
atgcaaaaccatcatgcatatatgcttcaagattgcgaggaatcattgaagacaactaggttaaattcattagcttcggcttacatgcatgactcatcgc |
115 |
Q |
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| T |
42647971 |
atgcaaaaccatcatgcatatatgcttcaagattgcgaggaatcattgaagacaactaggttaaattcattagcttcggcttacatgcatgactcatcgc |
42648070 |
T |
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| Q |
116 |
aacaaagaacaatggaactaggttaaattctttggtatgtcaatttagactctttgtaacttagctctctacaaagagaat-------ctaactaaatta |
208 |
Q |
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| T |
42648071 |
aacaaagaacaatggaactaggttaaattctttggtatgtcaatttagactctttgtaacttagccctctacaaagagaatgaacttgctaactaaatta |
42648170 |
T |
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| Q |
209 |
cgttcaaggtagttaacatggttcataagatcggaaat---------------------aagatggccattttatcaataatgactctttttatgtagtt |
287 |
Q |
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| T |
42648171 |
cgttcaaggtagttaacatggttcataagatcggaaataagatatattatttacacctcaagatagccattttatcaataatgactctttttatgtagtt |
42648270 |
T |
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| Q |
288 |
ttg---tagtagaaaatgtcccttttccaggttatgaatgactatatttatattcaaatggatagagaaataaaattgacttatgtcatcatagaagttg |
384 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42648271 |
ttgtactagtagaaaatgtcccttttccaagttatgaatgactatatttatattcaaatggatagagaaataaaattgacttatttcatcatagaagttg |
42648370 |
T |
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| Q |
385 |
atttaacatgtcgttaatat |
404 |
Q |
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| T |
42648371 |
atttaacatgtcattaatat |
42648390 |
T |
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