View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1856_low_8 (Length: 394)
Name: NF1856_low_8
Description: NF1856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1856_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 36823908 - 36824205
Alignment:
| Q |
1 |
atattcagggatgacatttttactaaaccaaccttattaactatctgtgtttcccacaatcttaagagtgcaaatgaagctccaccgatctccttagcta |
100 |
Q |
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| T |
36823908 |
atattcagggatgacatttttactaaaccaaccttaataactatctgtgtttcccacaatctta-gagtgcaaatgaagctccaccgatctccttagcta |
36824006 |
T |
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| Q |
101 |
acttgtgccctttgttagcattcca----aagctctgcaacataggcagatgcaaaacccattgatttagagaaaccatataaactgagaggatcttaac |
196 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36824007 |
acttgtgccctttgttagcattccatccaaagctctgcaacataggcaaaagcaaaacccattgatttagagaaaccatataaactgagaggatcttaac |
36824106 |
T |
|
| Q |
197 |
tcaaattcaatgaccattagctccatgaaggacaccacaaccaatcatatgattaaaccacgccatcaatgttaactctatcccatatataaaaacattt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36824107 |
tcaaattcaatgaccattagctccatgaaggacaccacaaccaatc--atgattaagccacgccatcaatgttaactctatcccatatataaaaacattt |
36824204 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 34782533 - 34782566
Alignment:
| Q |
11 |
atgacatttttactaaaccaaccttattaactat |
44 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
34782533 |
atgacatttttactaaactaaccttattaactat |
34782566 |
T |
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