View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857-Insertion-1 (Length: 966)
Name: NF1857-Insertion-1
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857-Insertion-1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 499 - 966
Target Start/End: Original strand, 48698778 - 48699276
Alignment:
| Q |
499 |
ttttatgatccgaacgtatgaaaatttcattttgcacatctgattttcaaatttagatgtcttgaaaatcggatgtgttaaaaatcctgaagtt------ |
592 |
Q |
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| T |
48698778 |
ttttatgatccgaacgtgtgaaaatttcattttgcacatctgattttcaaatttagatgtcttgaaaatcagatgtgctaaaaatcttgaaattacattt |
48698877 |
T |
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| Q |
593 |
----------------caaaccatgtattggatgcattcagattctgaaattcaaatgtgtaaaaagtcatgaaaaatgtatttttcaatttacatattt |
676 |
Q |
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| T |
48698878 |
tgccattaaaaaatttcaaaccatgtattggatgcattcagattctgaaattcaaatgtgtaaaaagtcatgaaaaatgtatttttcaatttacatattt |
48698977 |
T |
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| Q |
677 |
aaattttaaaatctggaaaaatgatgttgattcagcctaaagtgactgaaacgatccacacaagcaaagccc-aaaaaaccattttaaagcctaaaagat |
775 |
Q |
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| T |
48698978 |
aaattttaaaatctgaaaaaatgatgttgattcagcctaaagtgactgaaacgatccacacaagcaaagcccaaaaaaaccattttaaagcctaaaagat |
48699077 |
T |
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| Q |
776 |
gagaggattatgtatatgtactactgaagtaatggtgactcactagttccaaacta-ttttagttttactagttagtcatgaatttctattattagaggg |
874 |
Q |
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| T |
48699078 |
gagaggattatgtatatgtactactgaagtaatggtgactcactagttccaaactatttttagttttactagttagtcatgaatttctattattagaggg |
48699177 |
T |
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| Q |
875 |
aacattgcag-atttg-taggattctata--gatc-attgccttacac-agcatgtaatttc-ctttcggcaaattatagaagcattaatcatttcttc |
966 |
Q |
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| T |
48699178 |
aatattgcagaatttgttaggattctataaggatcaattgccttacacaaccatgtaatttctctttcggcaaattatagaagcattaatcatttcttc |
48699276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 300 - 503
Target Start/End: Original strand, 48698553 - 48698752
Alignment:
| Q |
300 |
aaggacaatctattttaggataggacccctacacgatagaatcatttaaggcagacggtcattgcaagcaaatctaagtggtgcctcatctgttacattt |
399 |
Q |
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| T |
48698553 |
aaggacaatctattttaggataggacccctacacgatagaatcatttaaggcagacggtcattgcaa----attttagtggtgcctcatctgttacattt |
48698648 |
T |
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| Q |
400 |
agaaacaaaaaatatttaacagtggctaattgatttttaggatattctttacatggccaaattttaaaatgttgatgtgtaaaatgcaattttctggact |
499 |
Q |
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| T |
48698649 |
acaaacaaaaaatatttaacagtggctaattgatttttaggatattctttacatggccgaattttaaaatgttgatgtgtaagatgcaattttctggact |
48698748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 48698351 - 48698469
Alignment:
| Q |
6 |
caagttccacaacgaatttggaaaattctaaaatggctgcaaacacgtgatgttgtaaagaatgaatgttgattagagccaaaaataaataatgaatgaa |
105 |
Q |
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| T |
48698351 |
caagttccacaacgaatttggaaaattctaaaatggctgcaaacatgtgatgttgtaaagaatgaatgttgattagagccaaaaataaat----aatgaa |
48698446 |
T |
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| Q |
106 |
tgaatgttgacaatacaattgta |
128 |
Q |
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| T |
48698447 |
tgaatgttgacaatacaattgta |
48698469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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