View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1857-Insertion-2 (Length: 917)

Name: NF1857-Insertion-2
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1857-Insertion-2
NF1857-Insertion-2
[»] chr1 (20 HSPs)
chr1 (11-917)||(37919246-37920159)
chr1 (338-505)||(11434702-11434868)
chr1 (408-556)||(37920150-37920297)
chr1 (454-508)||(7013186-7013240)
chr1 (413-511)||(42294508-42294606)
chr1 (343-486)||(32713176-32713319)
chr1 (426-536)||(11435266-11435376)
chr1 (11-59)||(37919784-37919832)
chr1 (337-389)||(37920111-37920163)
chr1 (454-505)||(52690257-52690308)
chr1 (468-556)||(28539435-28539523)
chr1 (375-452)||(7013654-7013731)
chr1 (455-490)||(7015106-7015141)
chr1 (424-507)||(32713651-32713733)
chr1 (426-505)||(44527918-44527996)
chr1 (442-555)||(43194227-43194340)
chr1 (464-556)||(28485812-28485905)
chr1 (423-452)||(37763974-37764003)
chr1 (464-505)||(43781941-43781982)
chr1 (454-507)||(45886913-45886966)
[»] chr8 (19 HSPs)
chr8 (81-338)||(36330330-36330587)
chr8 (84-338)||(36323484-36323738)
chr8 (338-495)||(7130096-7130253)
chr8 (408-512)||(1797689-1797792)
chr8 (342-526)||(39872120-39872301)
chr8 (424-511)||(13461138-13461225)
chr8 (426-512)||(39870864-39870950)
chr8 (394-505)||(45156358-45156469)
chr8 (408-490)||(7130619-7130701)
chr8 (408-536)||(45155940-45156068)
chr8 (471-536)||(9512480-9512545)
chr8 (468-556)||(14097568-14097657)
chr8 (338-392)||(7130581-7130635)
chr8 (424-497)||(23769054-23769126)
chr8 (407-456)||(42431677-42431726)
chr8 (468-536)||(20669574-20669642)
chr8 (11-58)||(7130581-7130628)
chr8 (408-505)||(17944828-17944923)
chr8 (408-441)||(33220703-33220736)
[»] chr5 (19 HSPs)
chr5 (349-511)||(14410710-14410872)
chr5 (375-508)||(25994488-25994630)
chr5 (347-490)||(17854666-17854810)
chr5 (408-519)||(14410179-14410289)
chr5 (375-508)||(25994913-25995059)
chr5 (375-507)||(26092516-26092657)
chr5 (425-541)||(29303586-29303701)
chr5 (378-493)||(25868074-25868189)
chr5 (424-540)||(6408561-6408677)
chr5 (424-495)||(25868523-25868594)
chr5 (375-505)||(26093007-26093146)
chr5 (472-556)||(21102290-21102375)
chr5 (464-519)||(36347904-36347959)
chr5 (468-532)||(2787679-2787743)
chr5 (408-452)||(32804891-32804935)
chr5 (467-507)||(40018093-40018133)
chr5 (404-442)||(17644529-17644567)
chr5 (402-451)||(7732844-7732893)
chr5 (375-444)||(15106366-15106435)
[»] chr2 (19 HSPs)
chr2 (338-505)||(3816243-3816408)
chr2 (408-555)||(42807371-42807518)
chr2 (421-554)||(42808604-42808737)
chr2 (408-511)||(33710842-33710945)
chr2 (424-536)||(42882475-42882585)
chr2 (81-303)||(5458785-5459007)
chr2 (408-495)||(19004773-19004859)
chr2 (407-505)||(19004906-19005003)
chr2 (408-493)||(6402361-6402445)
chr2 (338-390)||(3815836-3815888)
chr2 (454-494)||(26129319-26129359)
chr2 (464-526)||(6401727-6401789)
chr2 (338-388)||(42882596-42882646)
chr2 (468-532)||(5289792-5289856)
chr2 (11-58)||(3815841-3815888)
chr2 (11-58)||(42882599-42882646)
chr2 (430-490)||(304372-304431)
chr2 (468-501)||(19380244-19380277)
chr2 (468-505)||(37258262-37258299)
[»] chr4 (17 HSPs)
chr4 (345-490)||(19487488-19487633)
chr4 (406-555)||(26251385-26251533)
chr4 (351-508)||(36153914-36154070)
chr4 (357-508)||(32303849-32304010)
chr4 (406-505)||(16936093-16936191)
chr4 (375-490)||(53260183-53260298)
chr4 (433-507)||(53259769-53259843)
chr4 (356-452)||(32304727-32304823)
chr4 (408-536)||(40361680-40361807)
chr4 (424-536)||(4674957-4675069)
chr4 (468-536)||(42704359-42704427)
chr4 (467-505)||(20291124-20291162)
chr4 (468-532)||(43501740-43501804)
chr4 (441-556)||(51721486-51721601)
chr4 (467-556)||(32310465-32310554)
chr4 (471-508)||(45682744-45682781)
chr4 (424-505)||(55863649-55863729)
[»] chr7 (9 HSPs)
chr7 (431-556)||(42627400-42627526)
chr7 (408-495)||(30859813-30859900)
chr7 (426-491)||(31882911-31882975)
chr7 (379-458)||(16488152-16488231)
chr7 (464-495)||(432952-432983)
chr7 (431-489)||(5899174-5899232)
chr7 (408-490)||(42629204-42629285)
chr7 (465-506)||(36653262-36653303)
chr7 (468-505)||(46273524-46273561)
[»] chr3 (11 HSPs)
chr3 (418-519)||(52562645-52562746)
chr3 (369-456)||(16280909-16280996)
chr3 (424-557)||(4041052-4041187)
chr3 (424-490)||(45003346-45003413)
chr3 (408-557)||(36754123-36754273)
chr3 (426-495)||(4040890-4040958)
chr3 (338-391)||(36754085-36754138)
chr3 (477-554)||(45004492-45004569)
chr3 (468-536)||(53630328-53630396)
chr3 (11-58)||(36754085-36754132)
chr3 (454-487)||(12783471-12783504)
[»] chr6 (10 HSPs)
chr6 (424-536)||(30746520-30746631)
chr6 (338-486)||(26622196-26622344)
chr6 (338-486)||(26728174-26728322)
chr6 (349-452)||(32879699-32879802)
chr6 (408-505)||(31778784-31778880)
chr6 (423-490)||(1860348-1860414)
chr6 (454-505)||(12488454-12488505)
chr6 (338-558)||(5741175-5741397)
chr6 (467-556)||(5741513-5741603)
chr6 (467-519)||(4410259-4410310)
[»] scaffold1107 (1 HSPs)
scaffold1107 (408-489)||(1924-2007)
[»] scaffold0067 (1 HSPs)
scaffold0067 (406-508)||(15983-16086)
[»] scaffold0408 (1 HSPs)
scaffold0408 (468-556)||(7911-8000)
[»] scaffold0012 (1 HSPs)
scaffold0012 (376-452)||(36154-36230)
[»] scaffold0027 (1 HSPs)
scaffold0027 (384-491)||(49180-49295)
[»] scaffold0276 (1 HSPs)
scaffold0276 (467-536)||(3624-3693)
[»] scaffold0251 (1 HSPs)
scaffold0251 (468-536)||(16248-16316)
[»] scaffold0007 (3 HSPs)
scaffold0007 (408-536)||(186872-186999)
scaffold0007 (468-536)||(187457-187525)
scaffold0007 (468-510)||(256437-256479)
[»] scaffold0010 (1 HSPs)
scaffold0010 (464-497)||(28597-28630)


Alignment Details
Target: chr1 (Bit Score: 782; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 11 - 917
Target Start/End: Complemental strand, 37920159 - 37919246
Alignment:
Q  11 agttaactcacgcatgtattgtttttgcatgttcacaatgtttttgcaagtaaatgttaagctgacagaacccaatcccaccctttgctgttttgtatct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37920159 agttaactcacgcatgtattgtttttgcatgttcacaatgtttttgcaagtaaatgttaagctgacagaacccaatcccaccctttgctgttttgtatct 37920060  T
Q  111 atacattaaatgttaagttgacataaccatcaatgcaaacaacaagtaagagaacattaaataagctagacatttgtcttgtttctttgaaatctttttc 210  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37920059 atacattaaatgttaagttgacagaaccatcaatgcaaacaacaagtaagagaacattaaataagctagacatttgtcttgtttctttgagatctttttc 37919960  T
Q  211 atcaaactggtcagcaccatgtgcaggcagagaagctttcaagcctgcactaccaaaggccaacacgtatagactaatgaagagaaaagcttcatggttg 310  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37919959 atcaaactggtcagcaccatgtgctggcagagaagctttcaagcctgcactaccaaaggccaacacgtatagactaatgaagagaaaagcttcatggttg 37919860  T
Q  311 ccactaattttttcacacactgcatttt-gcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatg 409  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||    
T  37919859 ccactaattttttcacgcactgcatttttgcaaaaacattgtgaatatgcaaaaacaatacatgcgtgagttaactcacgcagatgttaattcctacgtg 37919760  T
Q  410 agttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggc 509  Q
    | |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||    
T  37919759 aattaacccatgttgcatgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacatacgttagttaactagcgcatgggcattttcggc 37919660  T
Q  510 aaggttgcagcgtgcgagcgaaaagtggaggaggagagcagaattctaacacaaatctatgcaatatgaaattgaaatacagtatggttgtggtggttgt 609  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37919659 aaggttgcatggtgcgagcgaaaagtagaggaggagagcagaattctaacacaaatctatgcaatatgaaattgaaatacagtatggttgtggtggttgt 37919560  T
Q  610 cacaatcggtatgtagaaattatcaacaggatgtagcctagatttaaaccacagtacaatgttaattccggtaaatggaagtccaacatcgaaattcata 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37919559 cacaatcggtatgtagaaattatcaacaggatgtagcctagatttaaaccacagtacaatgttaattccggtaaatggaagtccaacatcgaaattcata 37919460  T
Q  710 gtaggcaaatgattgagataaggatatcctctcagtcccattcctataattgcggtggaaggattaacaaatttgtttcaaaaggtggtag-aatgg-aa 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  37919459 gtaggcaaatgattgagataaggatatcctctcagtcccattcctataattgcggtggaaggattaacaaatttgtttcaaaaggtggtagaaatggaaa 37919360  T
Q  808 attttgaaattggctcaagatttgatgatgaagcttctggatcc-acga-taactcaactgatttctctg-ttcattttgtc-aaaatcgcgatacagtg 903  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  37919359 atattgaaattggctcaagatttgatgatgaagcttctggatccaacgattaactcaactgatttctctgtttcattttgtcaaaaatcgcgatacagtg 37919260  T
Q  904 cagcttgaaatagt 917  Q
    ||||||||||||||    
T  37919259 cagcttgaaatagt 37919246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 338 - 505
Target Start/End: Complemental strand, 11434868 - 11434702
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtc 437  Q
    |||||||||||||||||||||  |||||||||| || ||||| ||||||| |||  ||||||||||  | ||||||||| ||||| | ||||||||||||    
T  11434868 tgcaaaaacattgtgaatatgacaaaacaatacttgtgtgagctaactcaggcatgtgttaattccagcgtgagttaactcacgcagtgtgacttaagtc 11434769  T
Q  438 acgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    | ||||||||||||||||||| |  ||  ||||||||||||||||||||||||||||| |||||||||    
T  11434768 aggcatgtgtaaaaactaagtca-attttttttacacttgcgttagttaactagcgcaggagtatttt 11434702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 408 - 556
Target Start/End: Original strand, 37920150 - 37920297
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||  ||| | | ||||| |    
T  37920150 tgagttaactcacgttgcgtgatttaagtcacgcatgtgtaaaaactaagttatattaattttatatttacgttagttaactaatgcaagggcatttt-g 37920248  T
Q  508 gcaaggttgcagcgtgcgagcgaaaagtggaggaggagagcagaattct 556  Q
     ||||||||||   ||||||||||||||  ||| |||||||| ||||||    
T  37920249 acaaggttgcacgatgcgagcgaaaagtacagggggagagcataattct 37920297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 454 - 508
Target Start/End: Complemental strand, 7013240 - 7013186
Alignment:
Q  454 taagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcgg 508  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7013240 taagtcatgttaattttacacttgcgttagttaactagcgcatgagtattttcgg 7013186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 413 - 511
Target Start/End: Original strand, 42294508 - 42294606
Alignment:
Q  413 taacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaa 511  Q
    |||| ||||| |||||||||||||||| |||||||||||||||||| ||||   ||||||||||||| || ||||||| |||| | |||||||||||||    
T  42294508 taactcacgcagcgtgacttaagtcacacatgtgtaaaaactaagtcatgtattttttacacttgcgctaattaactaacgcaagggtattttcggcaa 42294606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 343 - 486
Target Start/End: Complemental strand, 32713319 - 32713176
Alignment:
Q  343 aaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgca 442  Q
    ||||||| |||| |||||||||||| || |  |||||||||||||||||  ||||||||    | ||||||||| ||||| ||||||||||||||||| |    
T  32713319 aaacattttgaaaatgcaaaaacaaaacttacgtgagttaactcacgcaagtgttaattttagcgtgagttaactcacgcagcgtgacttaagtcacgta 32713220  T
Q  443 tgtgtaaaaactaagttatgttaattttacacttgcgttagtta 486  Q
    ||||| |||||||| | |   |  ||||||||||||||||||||    
T  32713219 tgtgttaaaactaaatcaaaatttttttacacttgcgttagtta 32713176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 426 - 536
Target Start/End: Original strand, 11435266 - 11435376
Alignment:
Q  426 gtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcg 525  Q
    |||||||||||||  ||||||||||||||||||    |   ||||||||||||||||||||||||||| ||||||||||| | || |||||||| | |||    
T  11435266 gtgacttaagtcatccatgtgtaaaaactaagtcccttattttttacacttgcgttagttaactagcgtatgagtattttggtcatggttgcagggcgcg 11435365  T
Q  526 agcgaaaagtg 536  Q
    || ||||||||    
T  11435366 agtgaaaagtg 11435376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 37919784 - 37919832
Alignment:
Q  11 agttaactcacgcatgtattgtttttgcatgttcacaatgtttttgcaa 59  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37919784 agttaactcacgcatgtattgtttttgcatattcacaatgtttttgcaa 37919832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 37920111 - 37920163
Alignment:
Q  337 ttgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacg 389  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  37920111 ttgcaaaaacattgtgaacatgcaaaaacaatacatgcgtgagttaactcacg 37920163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 454 - 505
Target Start/End: Original strand, 52690257 - 52690308
Alignment:
Q  454 taagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  52690257 taagttatattaattttacacttgcgttagttaactaacgcatgagtatttt 52690308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 468 - 556
Target Start/End: Complemental strand, 28539523 - 28539435
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggaggaggagagcagaattct 556  Q
    |||||||||||||||||| ||||  ||||| ||||||| ||||||| ||||| | |||||||||||||| ||| | |||||| ||||||    
T  28539523 tttacacttgcgttagtttactaatgcatgggtattttaggcaaggctgcagggcgcgagcgaaaagtgcaggggaagagcaaaattct 28539435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 375 - 452
Target Start/End: Original strand, 7013654 - 7013731
Alignment:
Q  375 gtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaa 452  Q
    ||||||||| |||||||| ||||||||||||| |||||||||  | ||  ||||| |||||| |||||||||||||||    
T  7013654 gtgagttaattcacgcaggtgttaattcctacgtgagttaacttatgcgacgtgatttaagttacgcatgtgtaaaaa 7013731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 455 - 490
Target Start/End: Original strand, 7015106 - 7015141
Alignment:
Q  455 aagttatgttaattttacacttgcgttagttaacta 490  Q
    ||||||||||||||||||||||||||||||||||||    
T  7015106 aagttatgttaattttacacttgcgttagttaacta 7015141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 424 - 507
Target Start/End: Original strand, 32713651 - 32713733
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    |||||||||| |||||||||||||||||||||||| |  ||  |||||||||| ||||||||| ||| |||| ||| |||||||    
T  32713651 gcgtgacttacgtcacgcatgtgtaaaaactaagtca-attttttttacacttacgttagttatctaacgcaggagcattttcg 32713733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 426 - 505
Target Start/End: Complemental strand, 44527996 - 44527918
Alignment:
Q  426 gtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    |||||||||||||||||||||| |||| ||||| |||||   ||||||| ||||||||||||||| ||||  ||||||||    
T  44527996 gtgacttaagtcacgcatgtgt-aaaattaagtcatgtttgatttacacatgcgttagttaactaacgcaaaagtatttt 44527918  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 442 - 555
Target Start/End: Original strand, 43194227 - 43194340
Alignment:
Q  442 atgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggagga 541  Q
    ||||||||||| ||||||  |||  ||||| | ||||| || ||||||||||||||  |||||| || | |||||||| | |||||||||||||| ||||    
T  43194227 atgtgtaaaaattaagtttcgttt-ttttatatttgcgctaattaactagcgcatggatattttgggaatggttgcagggcgcgagcgaaaagtgcagga 43194325  T
Q  542 -ggagagcagaattc 555  Q
     |||||||| |||||    
T  43194326 tggagagcaaaattc 43194340  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 556
Target Start/End: Complemental strand, 28485905 - 28485812
Alignment:
Q  464 taattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggaggagg-agagcagaattct 556  Q
    ||||||||||||||| ||||||||||| || | ||| ||||| || | || |||||   |||||||||||||| ||| || |||||||||||||    
T  28485905 taattttacacttgcattagttaactaacgtaagagcatttttgggatggctgcaggtcgcgagcgaaaagtgcagggggaagagcagaattct 28485812  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 452
Target Start/End: Complemental strand, 37764003 - 37763974
Alignment:
Q  423 tgcgtgacttaagtcacgcatgtgtaaaaa 452  Q
    ||||||||||||||||||||||||||||||    
T  37764003 tgcgtgacttaagtcacgcatgtgtaaaaa 37763974  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 505
Target Start/End: Complemental strand, 43781982 - 43781941
Alignment:
Q  464 taattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||||||||| |||||| |||||||| ||||||||||||||    
T  43781982 taattttacacatgcgtttgttaactaacgcatgagtatttt 43781941  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 507
Target Start/End: Complemental strand, 45886966 - 45886913
Alignment:
Q  454 taagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    ||||| |||||||||||| || | |||||||||||||||||| | |||||||||    
T  45886966 taagtcatgttaattttatacctacgttagttaactagcgcaggggtattttcg 45886913  T

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Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 81 - 338
Target Start/End: Complemental strand, 36330587 - 36330330
Alignment:
Q  81 cccaatcccaccctttgctgttttgtatctatacattaaatgttaagttgacataaccatcaatgcaaacaacaagtaagagaacattaaataagctaga 180  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||| |||||| ||||||| ||||||||    
T  36330587 cccaatcccatcctttgctgttttgtatccatacattaaatgttaagctgacagaaccaccaatgcaaacagcaagcaagagagcattaaagaagctaga 36330488  T
Q  181 catttgtcttgtttctttgaaatctttttcatcaaactggtcagcaccatgtgcaggcagagaagctttcaagcctgcactaccaaaggccaacacgtat 280  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  36330487 catttgtcttgtttctttgggatctttttcatcaaactggtcagcaccatgtgctggcagagaagctttcaagcctgcactaccaaaggccaacaagtat 36330388  T
Q  281 agactaatgaagagaaaagcttcatggttgccactaattttttcacacactgcatttt 338  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36330387 agactaatgaagagaaaagcttcatggttgccattaattttttcacacactgcatttt 36330330  T

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Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 84 - 338
Target Start/End: Complemental strand, 36323738 - 36323484
Alignment:
Q  84 aatcccaccctttgctgttttgtatctatacattaaatgttaagttgacataaccatcaatgcaaacaacaagtaagagaacattaaataagctagacat 183  Q
    ||||||| |||||| ||| ||||||| |||||||||| |||||| ||||| ||||| ||| |||||   |||| |||||| ||||||| ||||| |||||    
T  36323738 aatcccatcctttgttgtcttgtatccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacat 36323639  T
Q  184 ttgtcttgtttctttgaaatctttttcatcaaactggtcagcaccatgtgcaggcagagaagctttcaagcctgcactaccaaaggccaacacgtataga 283  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||    
T  36323638 ttgtcttgtttctttgggatctttttcatcaaactggtcagcaccatgtgctggcagagaagctttcaagcctgcactaccaaaggccaacaagtagaga 36323539  T
Q  284 ctaatgaagagaaaagcttcatggttgccactaattttttcacacactgcatttt 338  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36323538 ccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttt 36323484  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 338 - 495
Target Start/End: Complemental strand, 7130253 - 7130096
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtc 437  Q
    |||||||||||||||||||||  |||||||||| || |||||| |||||| |||  |||| |||||  | ||||||||| ||||| ||||||||||||||    
T  7130253 tgcaaaaacattgtgaatatggcaaaacaatacttgcgtgagtaaactcatgcaagtgttcattccagcgtgagttaactcacgcagcgtgacttaagtc 7130154  T
Q  438 acgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgca 495  Q
    |||||||| |||||||||||| |  ||  |||||||||||  ||| ||||||||||||    
T  7130153 acgcatgtataaaaactaagtcaattttcttttacacttgtattaattaactagcgca 7130096  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 408 - 512
Target Start/End: Complemental strand, 1797792 - 1797689
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    |||||||||  |||| |||||||||||||||| |||||||||||| || || ||||||||||||||  ||||||||||||||| |||| | |||||||||    
T  1797792 tgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgca-gggtattttcg 1797694  T
Q  508 gcaag 512  Q
    |||||    
T  1797693 gcaag 1797689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 342 - 526
Target Start/End: Original strand, 39872120 - 39872301
Alignment:
Q  342 aaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgc 441  Q
    ||||||||||||||||| |||||||||||  |  |||||||||||||| |  |||||||| ||   ||||||||| || || |||||||||||||||| |    
T  39872120 aaaacattgtgaatatg-aaaaacaatacccgcatgagttaactcacgtaaatgttaatttctgtgtgagttaactcatgcagcgtgacttaagtcacac 39872218  T
Q  442 atgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcga 526  Q
    ||||||||||| |||||   |||  |||||||||||||||||||||  |||||| || ||||||  |||||| ||||| ||||||    
T  39872219 atgtgtaaaaattaagtcccgtt-tttttacacttgcgttagttaatcagcgcagga-tattttgagcaaggctgcagggtgcga 39872301  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 424 - 511
Target Start/End: Complemental strand, 13461225 - 13461138
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaa 511  Q
    |||||||||||||||||||||||||||||||||||   ||   ||||| |||||||||| ||||||||||||||  ||||||||||||    
T  13461225 gcgtgacttaagtcacgcatgtgtaaaaactaagtctcgtattttttatacttgcgttaattaactagcgcatggatattttcggcaa 13461138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 426 - 512
Target Start/End: Complemental strand, 39870950 - 39870864
Alignment:
Q  426 gtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaag 512  Q
    |||| |||||||||||||||||||||| ||||||  |||  ||||||||||||||||||||||||||||| |  |||||| ||||||    
T  39870950 gtgatttaagtcacgcatgtgtaaaaattaagttccgttttttttacacttgcgttagttaactagcgcaaggatattttgggcaag 39870864  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 505
Target Start/End: Original strand, 45156358 - 45156469
Alignment:
Q  394 tgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcg 493  Q
    ||||||||||  | |||| |||| || || ||||||||||||||||||||||||||||| ||| ||  |||  ||||||||||| |||||||||||| ||    
T  45156358 tgttaattccagcgtgagataactcaagcagcgtgacttaagtcacgcatgtgtaaaaattaaattccgttttttttacacttgtgttagttaactaacg 45156457  T
Q  494 catgagtatttt 505  Q
    || |||| ||||    
T  45156458 caggagtttttt 45156469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 408 - 490
Target Start/End: Original strand, 7130619 - 7130701
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaacta 490  Q
    ||||||||| || || ||||||||||||||||||||| |||||||||||||  | |   ||||||||||||||||||||||||    
T  7130619 tgagttaactcatgcagcgtgacttaagtcacgcatgcgtaaaaactaagtcgtttattttttacacttgcgttagttaacta 7130701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 408 - 536
Target Start/End: Complemental strand, 45156068 - 45155940
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    ||||||||| || || |||||| |||||||||||||||||||||| ||||||   |   ||||||||||  ||||||||| ||||||| ||||||||| |    
T  45156068 tgagttaactcatgcagcgtgatttaagtcacgcatgtgtaaaaattaagttccttattttttacacttatgttagttaattagcgcaagagtattttgg 45155969  T
Q  508 gcaaggttgcagcgtgcgagcgaaaagtg 536  Q
     || || || || | ||||||||||||||    
T  45155968 tcatggctgtagggcgcgagcgaaaagtg 45155940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 471 - 536
Target Start/End: Original strand, 9512480 - 9512545
Alignment:
Q  471 acacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtg 536  Q
    |||||||||||| ||||||| |||||| |||||||| |||||||||||| | |||||| |||||||    
T  9512480 acacttgcgttacttaactaacgcatgggtattttcagcaaggttgcagagcgcgagcaaaaagtg 9512545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 468 - 556
Target Start/End: Original strand, 14097568 - 14097657
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggaggagg-agagcagaattct 556  Q
    ||||||||||||||||||||||| | |||  ||||||| |||||||||| || | |||||||||||||| ||| || |||||| ||||||    
T  14097568 tttacacttgcgttagttaactatcacataggtattttgggcaaggttggagggcgcgagcgaaaagtgcagggggaagagcaaaattct 14097657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 7130581 - 7130635
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcag 392  Q
    |||||||||||||||||||||  |||||||||| || ||||||||||||| ||||    
T  7130581 tgcaaaaacattgtgaatatgacaaaacaatacttgcgtgagttaactcatgcag 7130635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 497
Target Start/End: Original strand, 23769054 - 23769126
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatg 497  Q
    |||||| |||||| |  |||||||||||||||||| | |||  ||||||| |||||||||||||||||||||||    
T  23769054 gcgtgagttaagtaatacatgtgtaaaaactaagtcacgttt-ttttacatttgcgttagttaactagcgcatg 23769126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 456
Target Start/End: Complemental strand, 42431726 - 42431677
Alignment:
Q  407 atgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaa 456  Q
    |||||||||| || || || ||||||||||||||||||||||||||||||    
T  42431726 atgagttaactcatgcagcatgacttaagtcacgcatgtgtaaaaactaa 42431677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 536
Target Start/End: Complemental strand, 20669642 - 20669574
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtg 536  Q
    |||||||||||| |||||||||| |||||| ||||||| | |||| |||||| | | ||||||||||||    
T  20669642 tttacacttgcgctagttaactaacgcatgggtattttggacaagcttgcagggcgtgagcgaaaagtg 20669574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 7130628 - 7130581
Alignment:
Q  11 agttaactcacgcatgtattgtttttgcatgttcacaatgtttttgca 58  Q
    |||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  7130628 agttaactcacgcaagtattgttttgtcatattcacaatgtttttgca 7130581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 505
Target Start/End: Original strand, 17944828 - 17944923
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||||||| || || |||| ||||||||||| ||||||| |||| ||||| | |||  |||||||| || |||||||||||| |||| |||||||||    
T  17944828 tgagttaactcatgcagcgttacttaagtcacacatgtgt-aaaattaagtcacgtttgttttacacatgtgttagttaactaacgca-gagtatttt 17944923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 33220703 - 33220736
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgc 441  Q
    ||||||||| ||||||||||||||||||||||||    
T  33220703 tgagttaactcacgctgcgtgacttaagtcacgc 33220736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 5e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 349 - 511
Target Start/End: Original strand, 14410710 - 14410872
Alignment:
Q  349 tgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgta 448  Q
    |||||| ||| |||||||| || || |||||||||||||||||  |||||||| |  ||||||||||| ||||| |||||||||||||||| ||||||||    
T  14410710 tgtgaaaatgaaaaaacaaaacttgcgtgagttaactcacgcacgtgttaatttcagcatgagttaactcacgcagcgtgacttaagtcacacatgtgta 14410809  T
Q  449 aaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaa 511  Q
    |||||||||| | |    ||||||||| ||||||||||||||||||| | |||||||||||||    
T  14410810 aaaactaagtcacgaattttttacactcgcgttagttaactagcgcaggggtattttcggcaa 14410872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 375 - 508
Target Start/End: Complemental strand, 25994630 - 25994488
Alignment:
Q  375 gtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaa---------ctaagttatgtta 465  Q
    |||||||||||||||||| |||||||| || | ||||||||| || || |||||||||||||||||||||||||||||          || || ||||||    
T  25994630 gtgagttaactcacgcaggtgttaatttctgcgtgagttaactcaggcggcgtgacttaagtcacgcatgtgtaaaaaaatgaaactttatgtcatgtta 25994531  T
Q  466 attttacacttgcgttagttaactagcgcatgagtattttcgg 508  Q
    ||||||||||||| ||||||||||| |||| | ||||||||||    
T  25994530 attttacacttgcattagttaactaacgcaggggtattttcgg 25994488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 347 - 490
Target Start/End: Original strand, 17854666 - 17854810
Alignment:
Q  347 attgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtg 446  Q
    |||||||| ||||||||||||  | | ||||||||||||||| ||  |||||||| |  | ||||||||| ||||| | ||||| |||||||||||||||    
T  17854666 attgtgaaaatgcaaaaacaaagcttaagtgagttaactcacacaagtgttaatttcagcgtgagttaactcacgcagtgtgacctaagtcacgcatgtg 17854765  T
Q  447 taaaaactaagttatg-ttaattttacacttgcgttagttaacta 490  Q
    |||||||||| | | | ||  ||||||||||||||||||||||||    
T  17854766 taaaaactaactcaagtttttttttacacttgcgttagttaacta 17854810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 408 - 519
Target Start/End: Complemental strand, 14410289 - 14410179
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||||||||| |  ||  ||||||||||||||| | ||||||||||| ||||||||| |    
T  14410289 tgagttaactcacgcagcgtgacttaagtcacgcatgtataaaaactaagtcacatt-tttttacacttgcgttggctaactagcgcaggagtattttag 14410191  T
Q  508 gcaaggttgcag 519  Q
    ||| || |||||    
T  14410190 gcatggctgcag 14410179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 375 - 508
Target Start/End: Original strand, 25994913 - 25995059
Alignment:
Q  375 gtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaac-------------taagttat 461  Q
    |||||||||||||||||  |||||||||   | ||||||||| || || |||||||||||||||||||||||||||||              ||||| ||    
T  25994913 gtgagttaactcacgcaagtgttaattctcgcgtgagttaactcatgcagcgtgacttaagtcacgcatgtgtaaaaaaaaaaacgaaattttaagtcat 25995012  T
Q  462 gttaattttacacttgcgttagttaactagcgcatgagtattttcgg 508  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  25995013 gttaattttacacttgcgttagttaactagcgtacgagtattttcgg 25995059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 375 - 507
Target Start/End: Complemental strand, 26092657 - 26092516
Alignment:
Q  375 gtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaac---------taagttatgtta 465  Q
    |||||||||||| ||||| |||||||| || | ||||||||| || ||  | |||||||||||||||| |||||||||          ||||| ||||||    
T  26092657 gtgagttaactctcgcaggtgttaatttctgcgtgagttaactcatgcgacatgacttaagtcacgcaagtgtaaaaaaatgaaattttaagtcatgtta 26092558  T
Q  466 attttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  26092557 attttacacttgcgttagttaactagcgcaagggtattttcg 26092516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 425 - 541
Target Start/End: Original strand, 29303586 - 29303701
Alignment:
Q  425 cgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgc 524  Q
    ||||||||||||| || ||||||||||  ||||| |||||   ||||||| |||||||||||||||||||| ||| ||||||   |||||||||| ||||    
T  29303586 cgtgacttaagtcgcgtatgtgtaaaat-taagtaatgtttgatttacacatgcgttagttaactagcgcaggagcattttcaataaggttgcagggtgc 29303684  T
Q  525 gagcgaaaagtggagga 541  Q
    |||||||||||| ||||    
T  29303685 gagcgaaaagtgcagga 29303701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 378 - 493
Target Start/End: Complemental strand, 25868189 - 25868074
Alignment:
Q  378 agttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttg 477  Q
    ||||||||||||||  ||||||  | | | ||||||||| || || |||||||||||||||| ||||||||||||||||||    |   |||||||||||    
T  25868189 agttaactcacgcacgtgttaacacatgcgtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaactaagtcccttattttttacacttg 25868090  T
Q  478 cgttagttaactagcg 493  Q
    ||||||||||||||||    
T  25868089 cgttagttaactagcg 25868074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 424 - 540
Target Start/End: Complemental strand, 6408677 - 6408561
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaact-aagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgt 522  Q
    ||||||||||||||||||||||||||||| | |||| | |||  |||||| ||| ||||||||||||| |||| | ||||||||| || || ||||| |     
T  6408677 gcgtgacttaagtcacgcatgtgtaaaaaattaagtcacgttt-ttttacgcttacgttagttaactaacgcaggggtattttcgccatggctgcagagc 6408579  T
Q  523 gcgagcgaaaagtggagg 540  Q
    | ||||||||||||||||    
T  6408578 gtgagcgaaaagtggagg 6408561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 424 - 495
Target Start/End: Original strand, 25868523 - 25868594
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgca 495  Q
    ||||||||||||||||||||||||||||||||| |  | |   ||||||||||||| |||||||||||||||    
T  25868523 gcgtgacttaagtcacgcatgtgtaaaaactaaatcttttattttttacacttgcgctagttaactagcgca 25868594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 375 - 505
Target Start/End: Original strand, 26093007 - 26093146
Alignment:
Q  375 gtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaac---------taagttatgtta 465  Q
    |||| ||||||||||||  ||||||||||| | | ||||||  ||  | |||||||||||||||| ||||||||||||          ||||| ||||||    
T  26093007 gtgacttaactcacgcacgtgttaattcctgcgtaagttaattcatacggcgtgacttaagtcacacatgtgtaaaaaaatgaaattttaagtcatgtta 26093106  T
Q  466 attttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    |||||||||||||||| ||||||||||||| | |||||||    
T  26093107 attttacacttgcgttggttaactagcgcaggggtatttt 26093146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 21102290 - 21102375
Alignment:
Q  472 cacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggaggagg-agagcagaattct 556  Q
    ||||||||||||||||||| |||||| ||||||| ||||||| | ||| | |||||||||||||| ||| || |||||| ||||||    
T  21102290 cacttgcgttagttaactaacgcatgggtattttgggcaaggctacagggcgcgagcgaaaagtgcaggtggaagagcaaaattct 21102375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 464 - 519
Target Start/End: Original strand, 36347904 - 36347959
Alignment:
Q  464 taattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcag 519  Q
    |||||||| |||||||||||||||||||| || ||||||||| | |||||||||||    
T  36347904 taattttatacttgcgttagttaactagcacaggagtattttggacaaggttgcag 36347959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 532
Target Start/End: Original strand, 2787679 - 2787743
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaa 532  Q
    ||||||||| ||||||||||||||||||||   ||||| | || |||||||| ||||||||||||    
T  2787679 tttacacttacgttagttaactagcgcatggacattttggacatggttgcagggtgcgagcgaaa 2787743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 32804891 - 32804935
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaa 452  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||    
T  32804891 tgagttaactcacgcggcgtgacttaagtcacacatgtgtaaaaa 32804935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 40018133 - 40018093
Alignment:
Q  467 ttttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  40018133 ttttacacttgcgttagttaactaacgcatgggtattttcg 40018093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 404 - 442
Target Start/End: Complemental strand, 17644567 - 17644529
Alignment:
Q  404 tacatgagttaacccacgctgcgtgacttaagtcacgca 442  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  17644567 tacatgagttaactcacgctgcgtgacttaaatcacgca 17644529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 7732844 - 7732893
Alignment:
Q  402 cctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaa 451  Q
    ||||| ||||||||| || |  ||||||||||||||||||||||||||||    
T  7732844 cctacgtgagttaactcatgtggcgtgacttaagtcacgcatgtgtaaaa 7732893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 15106366 - 15106435
Alignment:
Q  375 gtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatg 444  Q
    |||||||||||||||||| |||||   | ||  ||||||||| || ||| ||||||||||||||||||||    
T  15106366 gtgagttaactcacgcaggtgttataccttatgtgagttaactcatgctccgtgacttaagtcacgcatg 15106435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 338 - 505
Target Start/End: Original strand, 3816243 - 3816408
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtc 437  Q
    |||||||||||| |||||||   |||||||||| || ||||||||||| |||||| |||||||| | || ||||||||| ||||| ||||||||||||||    
T  3816243 tgcaaaaacattatgaatatagcaaaacaatacttgcgtgagttaacttacgcaggtgttaattacaacgtgagttaactcacgcagcgtgacttaagtc 3816342  T
Q  438 acgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    || ||| |||||||| ||||| |  ||  ||||||||||||||||||||| || ||||| | ||||||    
T  3816343 acacatatgtaaaaattaagtcaattt--ttttacacttgcgttagttaattaacgcataaatatttt 3816408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 408 - 555
Target Start/End: Complemental strand, 42807518 - 42807371
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaa-ctaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttc 506  Q
    ||||||||| || || ||||||||||||||||| ||||||||||| |||||| |||||  |||||||||||||||||||||||| |||||||||||||||    
T  42807518 tgagttaactcatgcggcgtgacttaagtcacgtatgtgtaaaaaactaagtcatgtt--ttttacacttgcgttagttaactaacgcatgagtattttc 42807421  T
Q  507 ggcaaggttgcagcgtgcgagcgaaaagtggaggagga-gagcagaattc 555  Q
    |  | |||||||| | |||| ||||||||  ||| ||| |||||||||||    
T  42807420 gttatggttgcagggcgcgaacgaaaagtacagggggaggagcagaattc 42807371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 421 - 554
Target Start/End: Original strand, 42808604 - 42808737
Alignment:
Q  421 gctgcgtgacttaagtcacgcatgtgtaa-aaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcag 519  Q
    ||||||||||||||||||||||||||||| ||||||||| |  ||  |||||||||||||||||||||||| |||| ||||||||||  || || |||||    
T  42808604 gctgcgtgacttaagtcacgcatgtgtaagaaactaagtcacattt-ttttacacttgcgttagttaactaacgcaggagtattttcatcatggctgcag 42808702  T
Q  520 cgtgcgagcgaaaagtggaggaggagagcagaatt 554  Q
     |||||||||||| ||| |||||||||||| ||||    
T  42808703 ggtgcgagcgaaaggtgcaggaggagagcataatt 42808737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 408 - 511
Target Start/End: Complemental strand, 33710945 - 33710842
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| ||| | | ||   ||||||||||||||||||||||||||||| | ||||||| |    
T  33710945 tgagttaactcacgcagcgtgacttaagtcacgcatgtgtaaaaattaactcacgtattttttacacttgcgttagttaactagcgcaggggtatttttg 33710846  T
Q  508 gcaa 511  Q
    ||||    
T  33710845 gcaa 33710842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 424 - 536
Target Start/End: Complemental strand, 42882585 - 42882475
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtg 523  Q
    ||||||||||||||||||||||||||||||||||| |  ||  ||||||||||||||||||||||||||| | | ||||||| | || || ||||| | |    
T  42882585 gcgtgacttaagtcacgcatgtgtaaaaactaagtcaattt--ttttacacttgcgttagttaactagcgtaggggtattttagtcatggctgcagggcg 42882488  T
Q  524 cgagcgaaaagtg 536  Q
     ||||||||||||    
T  42882487 tgagcgaaaagtg 42882475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 81 - 303
Target Start/End: Complemental strand, 5459007 - 5458785
Alignment:
Q  81 cccaatcccaccctttgctgttttgtatctatacattaaatgttaagttgacataaccatcaatgcaaacaacaagtaagagaacattaaataagctaga 180  Q
    |||||||||| |||||| || |||||||| ||||| | || |||||| ||||   |||| | ||||||||| |||| |||||||||||||| ||  | ||    
T  5459007 cccaatcccatcctttgttgatttgtatccatacaatgaaagttaagctgactgcaccacccatgcaaacagcaagcaagagaacattaaagaatgtgga 5458908  T
Q  181 catttgtcttgt-ttctttgaaatctttttcatcaaactggtcagcaccatgtgcaggcagagaagctttcaagcctgcactaccaaaggccaacacgta 279  Q
    ||||| |||| | |||||||  ||||  ||||||||| ||||| ||||||||||  ||||  | ||||||    |||||||| || |||||||||| |||    
T  5458907 cattt-tcttttcttctttgggatctgattcatcaaattggtctgcaccatgtgatggcaatgcagctttggttcctgcactgccgaaggccaacaagta 5458809  T
Q  280 tagactaatgaagagaaaagcttc 303  Q
    ||||| ||||||||||| ||||||    
T  5458808 tagaccaatgaagagaatagcttc 5458785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 408 - 495
Target Start/End: Complemental strand, 19004859 - 19004773
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgca 495  Q
    ||||||||| || || |||||||||||||||||||||||| |||| ||||| |||||   ||||||||||||||||||||||||||||    
T  19004859 tgagttaactcatgcggcgtgacttaagtcacgcatgtgt-aaaattaagtcatgtttgatttacacttgcgttagttaactagcgca 19004773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 407 - 505
Target Start/End: Original strand, 19004906 - 19005003
Alignment:
Q  407 atgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    |||||||||| || || |||||| |||||||||||||||||||||  ||||| | |||   |||||||||||||||||||||||| ||| |||||||||    
T  19004906 atgagttaactcatgcggcgtgatttaagtcacgcatgtgtaaaat-taagtcaagtttgatttacacttgcgttagttaactagtgcaggagtatttt 19005003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 6402361 - 6402445
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcg 493  Q
    ||||||||| || || |||||||||||||  || ||||||||||||||||||   ||| |||||||||| ||||||||||||||||    
T  6402361 tgagttaactcatgcagcgtgacttaagttgcgtatgtgtaaaaactaagtt-ccttatttttacacttacgttagttaactagcg 6402445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 3815888 - 3815836
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgc 390  Q
    |||||||||||||||||||||  |||||||||| || ||||||||||||||||    
T  3815888 tgcaaaaacattgtgaatatggcaaaacaatacttgcgtgagttaactcacgc 3815836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 26129319 - 26129359
Alignment:
Q  454 taagttatgttaattttacacttgcgttagttaactagcgc 494  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  26129319 taagtcatgttaattttacacttgcgttagttaactagcgc 26129359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 6401789 - 6401727
Alignment:
Q  464 taattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcga 526  Q
    |||||||| |||||||||||||||||| | ||||||||||||||| | || ||||| ||||||    
T  6401789 taattttatacttgcgttagttaactaacacatgagtattttcggaatggctgcagggtgcga 6401727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 42882646 - 42882596
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcac 388  Q
    |||||||||||||||||||||  |||||||||| || ||||||||||||||    
T  42882646 tgcaaaaacattgtgaatatggcaaaacaatacctgcgtgagttaactcac 42882596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 532
Target Start/End: Complemental strand, 5289856 - 5289792
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaa 532  Q
    |||||||||||| |||||||||| |||| | ||||||| |||| ||||||||  |||||||||||    
T  5289856 tttacacttgcgctagttaactaacgcaggggtattttgggcatggttgcaggatgcgagcgaaa 5289792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 3815841 - 3815888
Alignment:
Q  11 agttaactcacgcatgtattgtttttgcatgttcacaatgtttttgca 58  Q
    |||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  3815841 agttaactcacgcaagtattgttttgccatattcacaatgtttttgca 3815888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 42882599 - 42882646
Alignment:
Q  11 agttaactcacgcatgtattgtttttgcatgttcacaatgtttttgca 58  Q
    |||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  42882599 agttaactcacgcaggtattgttttgccatattcacaatgtttttgca 42882646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 304372 - 304431
Alignment:
Q  430 cttaagtcacgcatgtgt-aaaaactaagttatgttaattttacacttgcgttagttaacta 490  Q
    |||||||||||||||||| ||||||||||| | |||  |||||||||||| |||||||||||    
T  304372 cttaagtcacgcatgtgtaaaaaactaagtcacgtt--ttttacacttgcattagttaacta 304431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 501
Target Start/End: Original strand, 19380244 - 19380277
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagta 501  Q
    |||||||||||||||||||||||||||| |||||    
T  19380244 tttacacttgcgttagttaactagcgcaagagta 19380277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 505
Target Start/End: Complemental strand, 37258299 - 37258262
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  37258299 tttacacatgcgttagttaactagtgcatgagtatttt 37258262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 345 - 490
Target Start/End: Complemental strand, 19487633 - 19487488
Alignment:
Q  345 acattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatg 444  Q
    |||||||||| |||||||||||  || || |||||||||||||||||| |||| |||    ||||||||||| ||||| |||||| ||||||||||||||    
T  19487633 acattgtgaaaatgcaaaaacagaacctgcgtgagttaactcacgcagatgtttattttagcatgagttaactcacgcagcgtgagttaagtcacgcatg 19487534  T
Q  445 tgtaaaaactaagttatgttaattttacacttgcgttagttaacta 490  Q
    |||||||||||||| | ||   ||||| ||||| ||||||||||||    
T  19487533 tgtaaaaactaagtcacgtattttttatacttgtgttagttaacta 19487488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 406 - 555
Target Start/End: Complemental strand, 26251533 - 26251385
Alignment:
Q  406 catgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||||||||| ||  | ||||||||||||||||||||||||||||  ||||| |||||   ||||||| |||||||||||||||||||| ||| |||||    
T  26251533 catgagttaactcatacggcgtgacttaagtcacgcatgtgtaaaat-taagtcatgtttgatttacacatgcgttagttaactagcgcaagagcatttt 26251435  T
Q  506 cggcaaggttgcagcgtgcgagcgaaaagtggaggaggagagcagaattc 555  Q
       || || ||||| | |||||||||||||| ||| ||||||||||||||    
T  26251434 tatcatggatgcagggcgcgagcgaaaagtgaagggggagagcagaattc 26251385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 351 - 508
Target Start/End: Original strand, 36153914 - 36154070
Alignment:
Q  351 tgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattc-ctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaa 449  Q
    |||| |||||||||||| |  ||  ||||||||||||||||| ||||||||  |  | ||| ||||| ||||| |||| |||||||||||||||||||||    
T  36153914 tgaaaatgcaaaaacaaaatttgcttgagttaactcacgcaggtgttaattttcggcgtgacttaactcacgcggcgtaacttaagtcacgcatgtgtaa 36154013  T
Q  450 aaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcgg 508  Q
    || |||||||  |||  ||||||||||||||||  ||||||||||||| | ||||||||    
T  36154014 aatctaagtttcgtt--ttttacacttgcgttaaataactagcgcatgggcattttcgg 36154070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 357 - 508
Target Start/End: Complemental strand, 32304010 - 32303849
Alignment:
Q  357 tgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaa---- 452  Q
    ||||||||||| |  || |||||||||||||| ||  ||||||||||| | ||||||||| || ||  |||||||||||||||| |||||||||||        
T  32304010 tgcaaaaacaaaatctgtgtgagttaactcacacatgtgttaattcctgcgtgagttaactcatgcgacgtgacttaagtcacgtatgtgtaaaaaaaat 32303911  T
Q  453 ------ctaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcgg 508  Q
           ||||| ||||||||||||||||||||||||||||||||||||   ||||||||||    
T  32303910 gaaattttaagtcatgttaattttacacttgcgttagttaactagcgcaatggtattttcgg 32303849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 406 - 505
Target Start/End: Original strand, 16936093 - 16936191
Alignment:
Q  406 catgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||||||||| || || |||||||||||||||| ||||| ||||||||||||   |||  ||||||||||||||||||||||||||||| | |||||||    
T  16936093 catgagttaactcatgcggcgtgacttaagtcacacatgtctaaaaactaagtctcgtt-tttttacacttgcgttagttaactagcgcaagggtatttt 16936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 375 - 490
Target Start/End: Original strand, 53260183 - 53260298
Alignment:
Q  375 gtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacac 474  Q
    ||||||| |||||||||  |||||||| |  | || |||||| ||||| ||||||||||||||||| ||||||||||||||| | | |||  ||||||||    
T  53260183 gtgagttgactcacgcatgtgttaatttcggcgtgggttaactcacgcagcgtgacttaagtcacgtatgtgtaaaaactaaatcacgttttttttacac 53260282  T
Q  475 ttgcgttagttaacta 490  Q
    |||| ||| |||||||    
T  53260283 ttgcattaattaacta 53260298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 433 - 507
Target Start/End: Complemental strand, 53259843 - 53259769
Alignment:
Q  433 aagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    |||| |||||| |||||||||||||| | |||| |||||||||||||||| ||||||| |||| |||||||||||    
T  53259843 aagttacgcatctgtaaaaactaagtcacgttatttttacacttgcgttaattaactaacgcaggagtattttcg 53259769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 356 - 452
Target Start/End: Original strand, 32304727 - 32304823
Alignment:
Q  356 atgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaa 452  Q
    |||||||||||| || || |||||||||||||| ||  |||||||| |  | ||||||||| ||| | || ||||||||||||||||||||||||||    
T  32304727 atgcaaaaacaaaacttgcgtgagttaactcacacatgtgttaatttcagcgtgagttaactcacccagcatgacttaagtcacgcatgtgtaaaaa 32304823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 408 - 536
Target Start/End: Original strand, 40361680 - 40361807
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||| |||||   |||  |||||||| | || ||||||||||||||| |  |||||| |    
T  40361680 tgagttaactcacgtggcgtgacttaagtcacgcatgtgtaaaaattaagtcccgtt-tttttacacgtacgctagttaactagcgcagggatattttgg 40361778  T
Q  508 gcaaggttgcagcgtgcgagcgaaaagtg 536  Q
     || || ||||| | ||||||||||||||    
T  40361779 tcatggctgcagggcgcgagcgaaaagtg 40361807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 424 - 536
Target Start/End: Complemental strand, 4675069 - 4674957
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaatttt-acacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgt 522  Q
    ||||||||||||||||||||||||||||| |||| |   ||| |||| |||||||| ||||||||||||| |||| ||||||| | || |  ||||| |     
T  4675069 gcgtgacttaagtcacgcatgtgtaaaaa-taaggtcccttattttttacacttgcattagttaactagcacatgggtattttggtcatgactgcagggc 4674971  T
Q  523 gcgagcgaaaagtg 536  Q
    ||||||||||||||    
T  4674970 gcgagcgaaaagtg 4674957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 536
Target Start/End: Complemental strand, 42704427 - 42704359
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtg 536  Q
    ||||||||||||||||||| ||| |||||| ||||||| ||||||  ||||| | ||||||||||||||    
T  42704427 tttacacttgcgttagttagctaacgcatgggtattttgggcaagcctgcagggcgcgagcgaaaagtg 42704359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 505
Target Start/End: Original strand, 20291124 - 20291162
Alignment:
Q  467 ttttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  20291124 ttttacacttgcgttagttaactaacgcatgagtatttt 20291162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 532
Target Start/End: Complemental strand, 43501804 - 43501740
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaa 532  Q
    |||||||||||| ||||||||||||||| | | ||||| | || |||||||| ||||||||||||    
T  43501804 tttacacttgcgctagttaactagcgcaggggcattttggacatggttgcagggtgcgagcgaaa 43501740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 556
Target Start/End: Original strand, 51721486 - 51721601
Alignment:
Q  441 catgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggagg 540  Q
    |||||||||||||||||| | |    |||||||||||||||||||||||| |||| ||| |||||   ||  | ||||| | |||||||||||||| |||    
T  51721486 catgtgtaaaaactaagtcaagcattttttacacttgcgttagttaactaacgcaagagcattttgaacatagctgcagggcgcgagcgaaaagtgtagg 51721585  T
Q  541 aggagagcagaattct 556  Q
     | |||||| ||||||    
T  51721586 tgaagagcaaaattct 51721601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 556
Target Start/End: Original strand, 32310465 - 32310554
Alignment:
Q  467 ttttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggaggaggagagcagaattct 556  Q
    |||||||||||||||||||||||| || | | | ||||| ||  |||||||||   |||||||||||||| ||| ||| ||| |||||||    
T  32310465 ttttacacttgcgttagttaactaacgtaagggcatttttggtgaggttgcaggacgcgagcgaaaagtgcaggtggaaagcggaattct 32310554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 45682781 - 45682744
Alignment:
Q  471 acacttgcgttagttaactagcgcatgagtattttcgg 508  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  45682781 acacttgcattagttaagtagcgcatgagtattttcgg 45682744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 505
Target Start/End: Original strand, 55863649 - 55863729
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||||||||||||||  |||| |||||  ||||||| |||  |||||||| | ||||| ||||||| ||||||||||||||    
T  55863649 gcgtgacttaagtcacatatgtataaaat-taagttacgtttgttttacacatacgttaattaactaacgcatgagtatttt 55863729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 431 - 556
Target Start/End: Complemental strand, 42627526 - 42627400
Alignment:
Q  431 ttaagtcacgcatgtgtaaaaactaagttatg-ttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcg 529  Q
    ||||||||||||||| |||||||||||||  | ||| |||||||||| ||||||||||||| |||| |   |||||||||||| |||||| |||||||||    
T  42627526 ttaagtcacgcatgtataaaaactaagtttagattatttttacacttacgttagttaactaacgcagggacattttcggcaagattgcagggtgcgagcg 42627427  T
Q  530 aaaagtggaggaggagagcagaattct 556  Q
    ||||||| ||| |||||||| ||||||    
T  42627426 aaaagtgtagggggagagcaaaattct 42627400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 408 - 495
Target Start/End: Complemental strand, 30859900 - 30859813
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgca 495  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||  ||||||||||||||||||||||| |||||    
T  30859900 tgagttaactcacgcggcgtgacttaagtcatgcatgtgtaaaaactaagtcccgttttttttacacttgcgttagttaacttgcgca 30859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 426 - 491
Target Start/End: Original strand, 31882911 - 31882975
Alignment:
Q  426 gtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactag 491  Q
    |||||||||||||||||||||| |||| ||||  ||||| ||||||||| ||||||||||||||||    
T  31882911 gtgacttaagtcacgcatgtgt-aaaattaagacatgtttattttacacatgcgttagttaactag 31882975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 379 - 458
Target Start/End: Original strand, 16488152 - 16488231
Alignment:
Q  379 gttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagt 458  Q
    |||||||||||||  ||||||  ||| | ||| ||||| || || |||||||||||||||| ||||||||||||||||||    
T  16488152 gttaactcacgcatgtgttaacacctgcgtgaattaactcatgcagcgtgacttaagtcacacatgtgtaaaaactaagt 16488231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 495
Target Start/End: Original strand, 432952 - 432983
Alignment:
Q  464 taattttacacttgcgttagttaactagcgca 495  Q
    ||||||||||||||||||||||||||||||||    
T  432952 taattttacacttgcgttagttaactagcgca 432983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 431 - 489
Target Start/End: Original strand, 5899174 - 5899232
Alignment:
Q  431 ttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaact 489  Q
    ||||||| |||||||||||||||||||| | | |  |||||||||||||| ||||||||    
T  5899174 ttaagtcgcgcatgtgtaaaaactaagtaacgctctttttacacttgcgtgagttaact 5899232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 408 - 490
Target Start/End: Original strand, 42629204 - 42629285
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaacta 490  Q
    ||||||||| || || ||||||||||||||| ||||||||||||  ||||| ||||    ||||||| |||||||||||||||    
T  42629204 tgagttaactcatgcagcgtgacttaagtcatgcatgtgtaaaat-taagtcatgtatgatttacacatgcgttagttaacta 42629285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 506
Target Start/End: Complemental strand, 36653303 - 36653262
Alignment:
Q  465 aattttacacttgcgttagttaactagcgcatgagtattttc 506  Q
    |||||||||||||||||||||||||| |||| | ||||||||    
T  36653303 aattttacacttgcgttagttaactaacgcaggcgtattttc 36653262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 505
Target Start/End: Original strand, 46273524 - 46273561
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  46273524 tttacacttgcgttagttaactaacgcatgggtatttt 46273561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 418 - 519
Target Start/End: Complemental strand, 52562746 - 52562645
Alignment:
Q  418 cacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgc 517  Q
    ||||||||||||||||| ||||| || |||||||||||||||  |||  |||||||||| |||||||||||||||||| | ||||||| ||||||| |||    
T  52562746 cacgctgcgtgacttaactcacgtatctgtaaaaactaagttccgttttttttacacttacgttagttaactagcgcaggggtattttgggcaaggctgc 52562647  T
Q  518 ag 519  Q
    ||    
T  52562646 ag 52562645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 369 - 456
Target Start/End: Original strand, 16280909 - 16280996
Alignment:
Q  369 acatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaa 456  Q
    ||||| |||||||||||||| ||  |||||||| |  | ||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  16280909 acatgcgtgagttaactcacccaagtgttaatttcggcgtgagttaactcacgcggcgtgacttaagtcacgcaagtgtaaaaactaa 16280996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 424 - 557
Target Start/End: Original strand, 4041052 - 4041187
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagt-tatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgt 522  Q
    |||||||||||||||||||||||||||||||| ||   |  |  |||||||||||||||||||||||||| |||| ||||||| | || |  ||||| |     
T  4041052 gcgtgacttaagtcacgcatgtgtaaaaactaggtcccttatttttttacacttgcgttagttaactagcacatgggtattttggtcatgactgcagggc 4041151  T
Q  523 gcgagcgaaaagtgga-ggaggagagcagaattcta 557  Q
     ||||||||||||| | || ||||||||| ||||||    
T  4041152 acgagcgaaaagtgcagggtggagagcaggattcta 4041187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 45003413 - 45003346
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgt-taattttacacttgcgttagttaacta 490  Q
    |||||| |||||||||||||||||||||| ||||| |||| || |||||||||| |||||||||||||    
T  45003413 gcgtgatttaagtcacgcatgtgtaaaaattaagtcatgtatagttttacacttccgttagttaacta 45003346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 557
Target Start/End: Original strand, 36754123 - 36754273
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    ||||||||| |||||  |||||||||||| ||| |||| |||||||||||| |  ||  | |||||||||||||||||||||| |||| | ||||||| |    
T  36754123 tgagttaactcacgcaacgtgacttaagttacgtatgtataaaaactaagtcaattttttcttacacttgcgttagttaactaacgcaggggtattttgg 36754222  T
Q  508 gcaaggttgcagcgtgcgagcgaaaagtggagga-ggagagcagaattcta 557  Q
     |   ||||||  | | |||||||||||| |||| | ||||||||||||||    
T  36754223 tcgtagttgcaaggcgtgagcgaaaagtgcaggatgaagagcagaattcta 36754273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 426 - 495
Target Start/End: Complemental strand, 4040958 - 4040890
Alignment:
Q  426 gtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgca 495  Q
    |||||||||||||||||| ||||||||||||||    ||| ||||||||||||||||||||| |||||||    
T  4040958 gtgacttaagtcacgcatatgtaaaaactaagtccc-ttatttttacacttgcgttagttaattagcgca 4040890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 36754085 - 36754138
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgca 391  Q
    |||||||||||||||||||||  |||||||||| || |||||||||||||||||    
T  36754085 tgcaaaaacattgtgaatatggcaaaacaatacttgcgtgagttaactcacgca 36754138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 554
Target Start/End: Original strand, 45004492 - 45004569
Alignment:
Q  477 gcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggaggaggagagcagaatt 554  Q
    |||||||||||||| || | | |||||||  |||||| ||||| | |||||||||||||| ||||| |||||||||||    
T  45004492 gcgttagttaactaacgtaggggtattttgagcaaggctgcagagcgcgagcgaaaagtgcaggagaagagcagaatt 45004569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 536
Target Start/End: Original strand, 53630328 - 53630396
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtg 536  Q
    ||||||||||||||||||||||| |||||| | ||||| | ||||  ||||| | ||||||||||||||    
T  53630328 tttacacttgcgttagttaactaacgcatgggaattttggacaagcctgcagggcgcgagcgaaaagtg 53630396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 36754132 - 36754085
Alignment:
Q  11 agttaactcacgcatgtattgtttttgcatgttcacaatgtttttgca 58  Q
    |||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  36754132 agttaactcacgcaagtattgttttgccatattcacaatgtttttgca 36754085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 487
Target Start/End: Complemental strand, 12783504 - 12783471
Alignment:
Q  454 taagttatgttaattttacacttgcgttagttaa 487  Q
    |||||| |||||||||||||||||||||||||||    
T  12783504 taagttgtgttaattttacacttgcgttagttaa 12783471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 424 - 536
Target Start/End: Original strand, 30746520 - 30746631
Alignment:
Q  424 gcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtg 523  Q
    ||||||||||||||||||||||||||||  ||||| |||||   ||||||| ||||||||||||||| |||| | | ||||||| ||||||||||| ||     
T  30746520 gcgtgacttaagtcacgcatgtgtaaaat-taagtcatgtttgatttacacgtgcgttagttaactaacgcaggggcattttcgacaaggttgcagggta 30746618  T
Q  524 cgagcgaaaagtg 536  Q
    |||||||||||||    
T  30746619 cgagcgaaaagtg 30746631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 338 - 486
Target Start/End: Original strand, 26622196 - 26622344
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtc 437  Q
    |||||||||| ||||||||||  |||||||||  || |||||||||||||||||| |||||||| |  |  ||||||||  |||| || ||| ||| |||    
T  26622196 tgcaaaaacaatgtgaatatgacaaaacaatatttgtgtgagttaactcacgcaggtgttaatttcagcgcgagttaacttacgcagcatgatttatgtc 26622295  T
Q  438 acgcatgtgtaaaaactaagttatgttaattttacacttgcgttagtta 486  Q
    || |||||||||| | ||| ||| |||  ||||||| ||||||||||||    
T  26622296 acacatgtgtaaagattaaattaagttttttttacatttgcgttagtta 26622344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 338 - 486
Target Start/End: Original strand, 26728174 - 26728322
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtc 437  Q
    |||||||||| ||||||||||  |||||||||  || |||||||||||||||||| |||||||| |  |  ||||||||  |||| || ||| ||| |||    
T  26728174 tgcaaaaacaatgtgaatatgacaaaacaatatttgtgtgagttaactcacgcaggtgttaatttcagcgcgagttaacttacgcagcatgatttatgtc 26728273  T
Q  438 acgcatgtgtaaaaactaagttatgttaattttacacttgcgttagtta 486  Q
    || |||||||||| | ||| ||| |||  ||||||| ||||||||||||    
T  26728274 acacatgtgtaaagattaaattaagttttttttacatttgcgttagtta 26728322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 452
Target Start/End: Complemental strand, 32879802 - 32879699
Alignment:
Q  349 tgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgta 448  Q
    |||||| ||||||||| || || ||  ||||||||||||||||  |||||||| |  | ||||||||| ||||| ||||||||||||||||||| |||||    
T  32879802 tgtgaaaatgcaaaaataaaacttgcttgagttaactcacgcatgtgttaatttcagcgtgagttaactcacgcagcgtgacttaagtcacgcaagtgta 32879703  T
Q  449 aaaa 452  Q
    ||||    
T  32879702 aaaa 32879699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 408 - 505
Target Start/End: Complemental strand, 31778880 - 31778784
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||||||| || || ||||||||||||||||||||||||||||  ||||| | |||   ||||||| |||||||||||||||||||| | |||||||    
T  31778880 tgagttaactcatgcggcgtgacttaagtcacgcatgtgtaaaat-taagtcacgtttgatttacacatgcgttagttaactagcgcaggggtatttt 31778784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 1860414 - 1860348
Alignment:
Q  423 tgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaacta 490  Q
    ||||||||||||||||||||||||| |||| ||||| |||||   ||||||| |||||||||||||||    
T  1860414 tgcgtgacttaagtcacgcatgtgt-aaaattaagtcatgtttgatttacacatgcgttagttaacta 1860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 12488505 - 12488454
Alignment:
Q  454 taagttatgttaattttacacttgcgttagttaactagcgcatgagtatttt 505  Q
    ||||| ||||||||||||||||| ||||||||||||| | ||||||||||||    
T  12488505 taagtcatgttaattttacacttacgttagttaactaacacatgagtatttt 12488454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 558
Target Start/End: Complemental strand, 5741397 - 5741175
Alignment:
Q  338 tgcaaaaacattgtgaatatgcaaaaacaatacatgagtgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtc 437  Q
    |||||||| ||||| ||||||  ||||||| || || ||| |||||||||||||  ||||||  ||  | ||||||||| |  || || |||||||||||    
T  5741397 tgcaaaaatattgtaaatatggcaaaacaacacttgtgtgggttaactcacgcatgtgttaacacccgcgtgagttaactcgtgcagcatgacttaagtc 5741298  T
Q  438 acgcatgtgtaaaaactaagt-tatgttaattttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtg 536  Q
     ||||||| |||||||||| |   |  |  ||||||||||||||||| ||||||||||||  ||||||| | || || |||||   |||||| |||||||    
T  5741297 gcgcatgtataaaaactaaatcccttatttttttacacttgcgttagataactagcgcattggtattttggtcatggctgcaggacgcgagcaaaaagtg 5741198  T
Q  537 ga-ggaggagagcagaattctaa 558  Q
     | || | |||||||||||||||    
T  5741197 cagggtgaagagcagaattctaa 5741175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 556
Target Start/End: Original strand, 5741513 - 5741603
Alignment:
Q  467 ttttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtgga-ggaggagagcagaattct 556  Q
    |||||||||||||||||||||||| |||| | ||||||| | || || ||||| | |||||||||||||| | || | |||||||||||||    
T  5741513 ttttacacttgcgttagttaactaacgcaggtgtattttggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagcagaattct 5741603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 519
Target Start/End: Original strand, 4410259 - 4410310
Alignment:
Q  467 ttttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcag 519  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||| |||||    
T  4410259 ttttacacttgcgttagttaactaac-catgagtattttaggcaaggctgcag 4410310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 408 - 489
Target Start/End: Original strand, 1924 - 2007
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatg--ttaattttacacttgcgttagttaact 489  Q
    ||||||||| |||||  ||||||||||||||||||| |||||||||||||| |||  ||  |||||||||||||| ||||||||    
T  1924 tgagttaactcacgcaacgtgacttaagtcacgcatctgtaaaaactaagtcatgttttttttttacacttgcgtgagttaact 2007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 406 - 508
Target Start/End: Original strand, 15983 - 16086
Alignment:
Q  406 catgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatg-ttaattttacacttgcgttagttaactagcgcatgagtattt 504  Q
    ||||||||||| |||||  |||| |||||||||||||| |||||||||||||| | | ||  |||||||||||||| ||||||||  |||| | ||||||    
T  15983 catgagttaactcacgcaacgtggcttaagtcacgcatctgtaaaaactaagtcacgtttttttttacacttgcgtgagttaactcacgcaggggtattt 16082  T
Q  505 tcgg 508  Q
    ||||    
T  16083 tcgg 16086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 468 - 556
Target Start/End: Original strand, 7911 - 8000
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtggaggagg-agagcagaattct 556  Q
    ||||||||||||||||||||||| | |||  ||||||| |||||||||| || | |||||||||||||| ||| || |||||| ||||||    
T  7911 tttacacttgcgttagttaactatcacataggtattttgggcaaggttggagggcgcgagcgaaaagtgcagggggaagagcaaaattct 8000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 36154 - 36230
Alignment:
Q  376 tgagttaactcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaa 452  Q
    ||||||||||||||||  ||||||||||  | ||||||| | ||||| ||||||||||||||||| | |||||||||    
T  36154 tgagttaactcacgcacgtgttaattccagcgtgagttagctcacgcagcgtgacttaagtcacgtaagtgtaaaaa 36230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 491
Target Start/End: Complemental strand, 49295 - 49180
Alignment:
Q  384 ctcacgcagttgttaattcctacatgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaac--------taagttatgttaattttacact 475  Q
    ||||||||  |||||||||||   ||||||||| || || |||||| |||||||| |||||||||||||         ||||| ||||||||||||||||    
T  49295 ctcacgcaagtgttaattcctgtgtgagttaactcatgcggcgtgatttaagtcatgcatgtgtaaaaaacgaaattttaagtcatgttaattttacact 49196  T
Q  476 tgcgttagttaactag 491  Q
    ||||||| ||||||||    
T  49195 tgcgttaattaactag 49180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 536
Target Start/End: Original strand, 3624 - 3693
Alignment:
Q  467 ttttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtg 536  Q
    ||||||||||||||| |||||||| |||| ||||||||| | || || ||||| | ||||||||||||||    
T  3624 ttttacacttgcgttggttaactaacgcaggagtattttagtcatggctgcagggcgcgagcgaaaagtg 3693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 536
Target Start/End: Complemental strand, 16316 - 16248
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtg 536  Q
    ||||||||| ||||||||||||| |||||| ||||||| || ||  |||||| | ||||||||||||||    
T  16316 tttacacttacgttagttaactaacgcatgggtattttgggtaatcttgcagggcgcgagcgaaaagtg 16248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 536
Target Start/End: Complemental strand, 186999 - 186872
Alignment:
Q  408 tgagttaacccacgctgcgtgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacttgcgttagttaactagcgcatgagtattttcg 507  Q
    ||||||||| || ||  ||||||||||||||| ||||||| |||| ||||| |||||   ||||||| | |||||||||| ||||||| | | |||||||    
T  186999 tgagttaactcatgcaacgtgacttaagtcacacatgtgt-aaaattaagtcatgtttgatttacacatacgttagttaattagcgcaggggcattttcg 186901  T
Q  508 gcaaggttgcagcgtgcgagcgaaaagtg 536  Q
     ||  || |||| | ||||||||||||||    
T  186900 tcatagtagcagggcgcgagcgaaaagtg 186872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 536
Target Start/End: Original strand, 187457 - 187525
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggcaaggttgcagcgtgcgagcgaaaagtg 536  Q
    ||||||| |||||||||||||||| ||| | | ||||||| || |||||||| | ||||||||||||||    
T  187457 tttacacatgcgttagttaactagtgcaggggcattttcgtcatggttgcagggcgcgagcgaaaagtg 187525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 256479 - 256437
Alignment:
Q  468 tttacacttgcgttagttaactagcgcatgagtattttcggca 510  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||    
T  256479 tttacacttgcgttagttaactaacgcatgggtattttgggca 256437  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 497
Target Start/End: Complemental strand, 28630 - 28597
Alignment:
Q  464 taattttacacttgcgttagttaactagcgcatg 497  Q
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T  28630 taattttacacttgcgttagttaactaacgcatg 28597  T

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