View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1857-Insertion-4 (Length: 845)

Name: NF1857-Insertion-4
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1857-Insertion-4
NF1857-Insertion-4
[»] chr8 (8 HSPs)
chr8 (8-569)||(32627061-32627623)
chr8 (634-838)||(32627687-32627893)
chr8 (286-567)||(32708921-32709202)
chr8 (279-375)||(32703483-32703579)
chr8 (654-839)||(32703931-32704118)
chr8 (634-727)||(32709625-32709719)
chr8 (394-553)||(7292554-7292713)
chr8 (384-550)||(7297579-7297745)
[»] chr4 (3 HSPs)
chr4 (279-544)||(5810958-5811223)
chr4 (634-839)||(5811332-5811539)
chr4 (12-63)||(5810761-5810812)
[»] chr3 (3 HSPs)
chr3 (288-559)||(27736240-27736511)
chr3 (634-839)||(27736651-27736858)
chr3 (8-118)||(27736090-27736200)
[»] chr6 (8 HSPs)
chr6 (357-554)||(21943144-21943341)
chr6 (298-569)||(20116529-20116800)
chr6 (634-838)||(20115918-20116124)
chr6 (11-78)||(21941899-21941966)
chr6 (634-752)||(21943547-21943666)
chr6 (8-78)||(20117884-20117954)
chr6 (770-839)||(21943673-21943742)
chr6 (298-333)||(21943097-21943132)
[»] chr5 (1 HSPs)
chr5 (288-560)||(8030369-8030641)


Alignment Details
Target: chr8 (Bit Score: 547; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 569
Target Start/End: Original strand, 32627061 - 32627623
Alignment:
Q  8 cacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttatgattccctacagtatacattgcataattcatattaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627061 cacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttatgattccctacagtatacattgcataattcatattaat 32627160  T
Q  108 atcatcaaattaactcattttggcatgttcaaaa-aatatcatcaaattaacatttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaat 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627161 atcatcaaattaactcattttggcatgttcaaaaaaatatcatcaaattaacatttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaat 32627260  T
Q  207 gctccacatcaggtttaggttgacctaatgtagtaggaatgggtcgtgacccatcaataaaagaaaatatgcatcatactttacctccaagaccatgtca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627261 gctccacatcaggtttaggttgacctaatgtagtaggaatgggtcgtgacccatcaataaaagaaaatatgcatcatactttacctccaagaccatgtca 32627360  T
Q  307 ttaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaaccccctt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627361 ttaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaaccccctt 32627460  T
Q  407 caactatttcttcggcacgacacttgagaaagagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatat 506  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627461 caactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatat 32627560  T
Q  507 ataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaacaaaa 569  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32627561 ataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaatcaccaatcaacaaaa 32627623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 634 - 838
Target Start/End: Original strand, 32627687 - 32627893
Alignment:
Q  634 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccat-aaaggaaccaggaactcctgaga 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  32627687 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgaagaggaaaaattctaccatgaaaggaaccaggaactcctgaga 32627786  T
Q  733 agaagcatggacccatttcagtccccatttcttc-agtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatc 831  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32627787 agaagcatggacccatttcagtccccatttcatcaagtagtttttctttgaaaatgtcaagggacgtaaatatggtgttgaagtcatttcccggtagatc 32627886  T
Q  832 gttcaaa 838  Q
    |||||||    
T  32627887 gttcaaa 32627893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 286 - 567
Target Start/End: Original strand, 32708921 - 32709202
Alignment:
Q  286 tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatg 385  Q
    ||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||       ||||| ||||||||||||| |||||    
T  32708921 tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatg 32709020  T
Q  386 ttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaagagagagaaatctatttggaattgcttgtagtaagccttgacgacatt 485  Q
    ||| |||||||| ||| |||||||||| ||| |  ||||||||||||||||| ||||| |||||  |||| ||||| |||||||| ||  | |  |||||    
T  32709021 ttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaagagaaaaatcactttgaaattggttgtagtacgcagtaagtacatt 32709120  T
Q  486 caaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaacaa 567  Q
      |||||||||| |  |  || |||||||||||||| |||||||   ||  ||| ||||||||| |||| ||||||||||||    
T  32709121 tgaggggcttgtacgagccatgtaaatgttgcccttattgttgttcacattctccggaacctaaataatcaccaatcaacaa 32709202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 32703483 - 32703579
Alignment:
Q  279 atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttctt 375  Q
    |||||| ||||||| ||||||||| ||||||||| ||||||||| || |||||||| |||||||||||| ||||||| |||||  ||||||||||||    
T  32703483 atcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgcttgatggatcttcgctttttctt 32703579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 654 - 839
Target Start/End: Original strand, 32703931 - 32704118
Alignment:
Q  654 aaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccata-aaggaaccaggaactcctgagaagaagcatggacccatttca 752  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||| || ||||| |||||||| ||||| ||  ||||| |||| ||  |||||||     
T  32703931 aaggctataagaggaatgaacaaaatgcaaacttttattaggaaaaatcctgccatagaaggaaccgggaaccccaaagaagtagcaaggtaccatttcg 32704030  T
Q  753 gtccccatttc-ttcagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaa 839  Q
    ||  |||||||   | |||| |||||||||||  |||| |||||| ||||||   |||||||||| || || ||||||||||||||||    
T  32704031 gtttccatttcagcctgtagattttctttgaacgtgtcgagggacctaaatacattgttgaagtcgttccctggtagatcgttcaaaa 32704118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 634 - 727
Target Start/End: Original strand, 32709625 - 32709719
Alignment:
Q  634 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccata-aaggaaccaggaactcc 727  Q
    ||||||||||||| |||   |||||| ||||||||||| ||||||||||||||||||  ||||||||| || ||||| || ||||||||||||||    
T  32709625 caaaccttagatagccacataaggctgtaagaggaatggacaaaatgcaaactttgattaggaaaaatcctgccatagaaagaaccaggaactcc 32709719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 394 - 553
Target Start/End: Original strand, 7292554 - 7292713
Alignment:
Q  394 atgcaacccccttcaactatttcttcggcacgacacttgagaaagagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggc 493  Q
    |||| |||||||||||| | ||| |  || |||||||||||||| |  || || ||| |||| ||||||| |||||||||||||||||||||  |||| |    
T  7292554 atgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggac 7292653  T
Q  494 ttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaa 553  Q
    |||||  |   || |||||||| ||||| ||||| |||  ||| || |||||||||||||    
T  7292654 ttgtgtcgctgatgtaaatgttacccttattgttatctataccttcgggaacctaattaa 7292713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 550
Target Start/End: Original strand, 7297579 - 7297745
Alignment:
Q  384 tgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaagagagagaaatctatttggaattgcttgtagtaagccttgacgaca 483  Q
    ||||| || |||||||||||||||||||| ||| || ||||||||||||||||| |  ||||| ||| |||  ||||| |  ||||| || ||||| |||    
T  7297579 tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaaattgatcatagtatgctttgacaaca 7297678  T
Q  484 ttcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaat 550  Q
    ||  |||| ||||||  |   || |||||||||| ||| ||||| |||  |||||| ||||||||||    
T  7297679 tttgagggacttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaat 7297745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 9e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 279 - 544
Target Start/End: Original strand, 5810958 - 5811223
Alignment:
Q  279 atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcct 378  Q
    |||||| | ||||| ||| ||||| |||||||||||||||||||  |||||||||||||||| | |||||||||||| |||||    | |||||| ||||    
T  5810958 atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcct 5811057  T
Q  379 acaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaagagagagaaatctatttggaattgcttgtagtaagccttga 478  Q
    | |||||||| |||||||  ||| |||||||||| |||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||||||||     
T  5811058 aaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctgtttgaaattgcttgtagtaagccttgt 5811157  T
Q  479 cgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaa 544  Q
     ||||||  ||||||||||||| |  |  |||||||||||||||||||||||| || |||||||||    
T  5811158 ggacatttgaggggcttgtgctcgtcaggtaaatgttgcccttgttgttgtctccaacctcaggaa 5811223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 634 - 839
Target Start/End: Original strand, 5811332 - 5811539
Alignment:
Q  634 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaa-ggaaccaggaactcctgaga 732  Q
    ||||||||||||||||| ||||| || ||||| ||||| |||||||||||||||| |   ||||| || |||| ||||| ||| |||||||| || ||||    
T  5811332 caaaccttagataaccattgaagactgtaagaagaatgcacaaaatgcaaacttttatctggaaagatcctactataaaaggatccaggaacaccagaga 5811431  T
Q  733 agaagcatggacccatttcagtccccatttcttca-gtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatc 831  Q
    || |||| ||||||||||||||  ||||||| | | ||||||||||||||||  ||||||||||| |||||| |  |||||| |||||||||||||||||    
T  5811432 agtagcaaggacccatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggtagatc 5811531  T
Q  832 gttcaaaa 839  Q
    ||||||||    
T  5811532 gttcaaaa 5811539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 5810761 - 5810812
Alignment:
Q  12 tcagatggagatggataatatataggaatgttgaaagtattgagtttctctt 63  Q
    ||||||||||||||||||||  |||| ||||||||| |||||||||||||||    
T  5810761 tcagatggagatggataatagttagggatgttgaaactattgagtttctctt 5810812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 9e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 288 - 559
Target Start/End: Original strand, 27736240 - 27736511
Alignment:
Q  288 tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt 387  Q
    ||||| ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| || ||||    
T  27736240 tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt 27736339  T
Q  388 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaagagagagaaatctatttggaattgcttgtagtaagccttgacgacattca 487  Q
    | ||||||   | | |||||||||| ||||| |||||||||    ||||| | |||||||||| || | |||||||||||||||||||||| ||| ||      
T  27736340 agaatcatttgagctccttcaactaattctttggcacgacatcgaagaaaaaaagagaaatctgttcgaaattgcttgtagtaagccttgatgacgtttg 27736439  T
Q  488 aggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataacca 559  Q
    ||||||||||||| |  |  |||||||| |||||||||||||| |||||||| |||||||||| ||| ||||    
T  27736440 aggggcttgtgctcgtcaggtaaatgtttcccttgttgttgtcagcaccctctggaacctaatgaatcacca 27736511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 634 - 839
Target Start/End: Original strand, 27736651 - 27736858
Alignment:
Q  634 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaag-gaaccaggaactcctgaga 732  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||| | |   ||||||||||| |||||||  ||||||||||||||  |||    
T  27736651 caaaccttagatagccattgaagactatacgaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaactccataga 27736750  T
Q  733 agaagcatggacccatttcagtccccatttcttca-gtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatc 831  Q
    || |||| || || |||| |||  ||||||| ||| ||||||| ||||||||  ||||||||||||| |||| | |||||||||||||||||||||||||    
T  27736751 agtagcacgggcctattttagtttccatttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatc 27736850  T
Q  832 gttcaaaa 839  Q
     |||||||    
T  27736851 attcaaaa 27736858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 27736090 - 27736200
Alignment:
Q  8 cacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttatgattccctacagtatacattgcataattcatattaat 107  Q
    ||||||||||||||||||||||||  |||| |||||||||||||||| ||||||||| || |||||||||| ||| |||||||  |||||| |||||||     
T  27736090 cacttcagatggagatggataataattagggatgttgaaagtattgattttctcttcgttaatgattccctgcagcatacattaaataattaatattaac 27736189  T
Q  108 atcatcaaatt 118  Q
    ||||| |||||    
T  27736190 atcattaaatt 27736200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 357 - 554
Target Start/End: Original strand, 21943144 - 21943341
Alignment:
Q  357 tggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaagagagagaaatctatttgg 456  Q
    ||||||||||| || |||| ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||| ||||| |||||| | ||     
T  21943144 tggattgtcgcattctcttactaaaaatgttataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatctctatga 21943243  T
Q  457 aattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaat 554  Q
    |||||||  ||||||||||||| ||||||  ||||||||||| | |  |  |||||||||||||| ||||||||| |||||| ||| ||||| |||||    
T  21943244 aattgctcatagtaagccttgaagacatttgaggggcttgtggtcgccaagtaaatgttgcccttattgttgtctacacccttagggacctatttaat 21943341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 298 - 569
Target Start/End: Complemental strand, 20116800 - 20116529
Alignment:
Q  298 accatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgc 397  Q
    ||||| |||||||||||  |||||||||||||||||| |||||||  | | ||||||  |||||  || |||| |||||||| |||||| | ||||||||    
T  20116800 accatatcattaagagctgtagccaaaagttcccaaaggtaacaaaccccattgcttaatggatcatcactttctcttcctataaatgtcagaatcatgc 20116701  T
Q  398 aacccccttcaactatttcttcggcacgacacttgagaaagagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgt 497  Q
    |||| |||||||| | ||||| |||||||||||||||||| ||||||||||| ||  | ||||| |  || || ||||||| ||||||  | ||||||||    
T  20116700 aacctccttcaaccaattctttggcacgacacttgagaaaaagagagaaatcaatacgaaattgttcataatatgccttgaagacatttgatgggcttgt 20116601  T
Q  498 gctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaacaaaa 569  Q
    | | | ||| ||||| ||||||||||||||||   |||| |  |||||||||||||| ||| ||| ||||||    
T  20116600 gttcgctatgtaaatattgcccttgttgttgttcacaccattgggaacctaattaatcaccgatcgacaaaa 20116529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 634 - 838
Target Start/End: Complemental strand, 20116124 - 20115918
Alignment:
Q  634 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccat-aaaggaaccaggaactcctgaga 732  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| | |  ||| |||||||| |||| ||||||||| ||||| || ||||    
T  20116124 caaaccttagataaccaatgaatgctatatgaggaatgaactaaatgtaaactctcattagggaaaattctgccataaaaggaaccgggaacaccagaga 20116025  T
Q  733 agaagcatggacccatttcagtccccatttcttcag-tagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatc 831  Q
    || |||| |||||||||| | |  ||| ||| | ||  || |||||||||||  ||||||||||||||||||||  ||||||||| ||||| | ||||||    
T  20116024 agtagcaaggacccattttattttccaattcattagaaagcttttctttgaaggtgtcaagggacttaaatatgccgttgaagtcgtttccggatagatc 20115925  T
Q  832 gttcaaa 838  Q
    |||||||    
T  20115924 gttcaaa 20115918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 21941899 - 21941966
Alignment:
Q  11 ttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttatgattccct 78  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  21941899 ttcagatggagatggaaaatagataggaatgttgaaagtattgagtttctcttcttctatgattccct 21941966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 634 - 752
Target Start/End: Original strand, 21943547 - 21943666
Alignment:
Q  634 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccat-aaaggaaccaggaactcctgaga 732  Q
    ||||||||||| | ||||||||| ||  |||||| ||||| |||||||||||||||   |||||||||||| |||| ||||||||| ||||| ||  |||    
T  21943547 caaaccttagagagccaatgaagactgcaagaggcatgaataaaatgcaaactttggtaaggaaaaattctgccataaaaggaaccgggaacaccaaaga 21943646  T
Q  733 agaagcatggacccatttca 752  Q
    || |||| ||||| ||||||    
T  21943647 agtagcaaggaccaatttca 21943666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 20117954 - 20117884
Alignment:
Q  8 cacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttatgattccct 78  Q
    |||||||| |||||||||||||||  |||| |  ||||||||||||||  ||||||||| |||||||||||    
T  20117954 cacttcagttggagatggataatagttagggagattgaaagtattgagggtctcttcttctatgattccct 20117884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 839
Target Start/End: Original strand, 21943673 - 21943742
Alignment:
Q  770 agtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaa 839  Q
    ||||||||||||||  | ||||||||| |||||| | ||||||| || ||||| ||||||||||||||||    
T  21943673 agtttttctttgaaggtctcaagggacctaaatacgttgttgaaatcgtttccgggtagatcgttcaaaa 21943742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 21943097 - 21943132
Alignment:
Q  298 accatgtcattaagagccatagccaaaagttcccaa 333  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21943097 accatatcattaagagccatagccaaaagttcccaa 21943132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 560
Target Start/End: Complemental strand, 8030641 - 8030369
Alignment:
Q  288 tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt 387  Q
    |||||||||||||||||||||||| || | ||| | ||| |||||||| || |||||||| |||||   |  ||  || ||||||||||| |  | |||     
T  8030641 tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctatatttatcatcactttttcttcccaagattgtg 8030542  T
Q  388 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaagagagagaaatctatttggaattgcttgtagtaagccttgacgacattca 487  Q
    | || ||| | |||||| ||||| | |||||| ||||||||||||||||| |  ||||||||| |||| |||||||  | |||||| ||||  || ||      
T  8030541 agaaccatacgacccccgtcaacaagttcttctgcacgacacttgagaaacaatgagaaatctctttgaaattgctcatggtaagcgttgagcacgtttg 8030442  T
Q  488 aggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaa 560  Q
     |||||||||| | |  || |||||||| ||||| || || ||| |||| | |||||||||| |||| |||||    
T  8030441 cggggcttgtggtagccatgtaaatgttacccttattattctctacacctttaggaacctaagtaatcaccaa 8030369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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