View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1857-Insertion-5 (Length: 813)

Name: NF1857-Insertion-5
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1857-Insertion-5
NF1857-Insertion-5
[»] chr7 (8 HSPs)
chr7 (489-813)||(12105249-12105585)
chr7 (112-403)||(12105830-12106121)
chr7 (127-250)||(10675933-10676056)
chr7 (15-94)||(12095017-12095096)
chr7 (92-150)||(12094668-12094726)
chr7 (8-94)||(12106469-12106554)
chr7 (439-487)||(12105781-12105829)
chr7 (650-753)||(1459249-1459350)
[»] chr2 (5 HSPs)
chr2 (112-268)||(1404433-1404593)
chr2 (205-283)||(405147-405225)
chr2 (392-483)||(821607-821698)
chr2 (256-290)||(26592319-26592353)
chr2 (489-598)||(973779-973888)
[»] chr3 (3 HSPs)
chr3 (222-283)||(45809515-45809576)
chr3 (112-174)||(45809438-45809500)
chr3 (700-781)||(45810460-45810543)
[»] chr6 (1 HSPs)
chr6 (491-562)||(10116520-10116591)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-111; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 489 - 813
Target Start/End: Complemental strand, 12105585 - 12105249
Alignment:
Q  489 aacataatgtgataactctgtaggcctccaaatgcaaagtcacgcatcgtacaagttctaagggttgacgaaaggcagctcggaacaaattttggatggg 588  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||| |  |||||| ||||||||||||    
T  12105585 aacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtttgatgaaaggcaacctggaacagattttggatggg 12105486  T
Q  589 accacttttcatgctcatattgtccaaagtatccatccccccaaaaacttccttctatgtgctgttaataatacaaaagaaataaattgatacatacttg 688  Q
    |||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12105485 accacttttcattctcatattctccaaagtatccatcctcccaaaaacttccttttatgtgctgttaataatacaaaagaaataaattgatacatacttg 12105386  T
Q  689 tatgtcaagaaaagaaagg---------aaaaaataaattcaatatgactgttagatttaagaaacaaacctg-aaaaggtc-agattttgaagcttagg 777  Q
    ||||| || ||||||||||         ||||| |||||  ||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  12105385 tatgttaaaaaaagaaaggaagaaaaaaaaaaattaaatcaaatatgattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttagg 12105286  T
Q  778 acaaa-gtgcagcattcttggaactatatcccaatta 813  Q
    ||||| |||||||||||||||||||||||||||||||    
T  12105285 acaaaggtgcagcattcttggaactatatcccaatta 12105249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 112 - 403
Target Start/End: Complemental strand, 12106121 - 12105830
Alignment:
Q  112 aattctaccgaactcaccgctgatctaaacatgcacttagtgtctaccttattcaacatgttttctatttatctattaattaataatactaatttaaggg 211  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  12106121 aattctaccaaactcaccgctgatctaaacatgcacttagtgtctaccttcttcaacatgttttctgtttatctcttaattaataatactaatttaaggg 12106022  T
Q  212 tccttcactgacattgcaaaagtgaccaagaaaccaaaagcttgtctgcctatgcctgctacactacccttttaaaattgaccgattattcattctttac 311  Q
    |||||||  |||||| ||||| ||||||| ||||| ||| |||||||||| ||||||||||||||||| |||||||||| |||| |||||||||| |||     
T  12106021 tccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacactaccgttttaaaattaaccggttattcattccttat 12105922  T
Q  312 gcagcaaataactaatgtcaataaacaaaatcttcaaaaagatcacgcgagtaaaaagctaaatcaatcaaggatcattttttcttaatttg 403  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||| | ||||||||||||||    
T  12105921 gcagcaaataactaatgtcaataaaccaaatcttcaaaaagatcatgcaagtaaaaagctaaatcaattaaggataaatttttcttaatttg 12105830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 10675933 - 10676056
Alignment:
Q  127 accgctgatctaaacatgcacttagtgtctaccttattcaacatgttttctatttatctattaattaataatactaatttaagggtccttcactgacatt 226  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  10675933 accgctgatctaaacatgtacttagtgtctaccttcttcaacatgttttctatttatctcttaattaatgataataatttaagggtccttcactgacatt 10676032  T
Q  227 gcaaaagtgaccaagaaaccaaaa 250  Q
    ||||||||||||||| ||||||||    
T  10676033 gcaaaagtgaccaaggaaccaaaa 10676056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 12095096 - 12095017
Alignment:
Q  15 catatggtaaagaatcccgggtaaacattggtgtagatatacttgtatacagttaattgtattagaatgcgattagtagt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12095096 catatggtaaagaatcccgggtaaacattggtgtagatatacttgtatacagttaattgtattagaatgcgattagtagt 12095017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 12094726 - 12094668
Alignment:
Q  92 agttagacagcaacaccagtaattctaccgaactcaccgctgatctaaacatgcactta 150  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12094726 agttagacggcaacaccagtaattctaccgaactcaccgctgatctaaacatgcactta 12094668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 12106554 - 12106469
Alignment:
Q  8 tgaatctcatatggtaaagaatcccgggtaaacattggtgtagatatacttgtatacagttaattgtattagaatgcgattagtagt 94  Q
    ||||||||||||||| ||||||||||  |||| || ||  ||||||| ||||||||||||||||||||||||||||| |||||||||    
T  12106554 tgaatctcatatggtgaagaatcccgt-taaatatcggaatagatattcttgtatacagttaattgtattagaatgcaattagtagt 12106469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 12105829 - 12105781
Alignment:
Q  439 agcacaaagttcctaaaaccagcaaatccaacaatctcatggtagcaac 487  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  12105829 agcacaaagttcataaaatcagcaaatccaacaatctcatggtagcaac 12105781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 753
Target Start/End: Original strand, 1459249 - 1459350
Alignment:
Q  650 ctgttaataatacaaaagaaataaattgatacatacttgtatgtcaagaaaagaaaggaaaaaataaattcaatatgactgttagatttaagaaacaaac 749  Q
    |||| ||||||||| |  |||||||  ||||||||| ||||||| |||||||| ||||||||||  |||  ||||| | ||||| | |||||||||||||    
T  1459249 ctgtcaataatacagacaaaataaaacgatacatacatgtatgttaagaaaaggaaggaaaaaa--aatcaaatataattgttaaaattaagaaacaaac 1459346  T
Q  750 ctga 753  Q
    ||||    
T  1459347 ctga 1459350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 112 - 268
Target Start/End: Complemental strand, 1404593 - 1404433
Alignment:
Q  112 aattctaccgaactcaccgctgatctaaacatgcacttagt---gtctaccttattcaacatgttttctatttatctattaattaataatactaatttaa 208  Q
    |||||||| |||||| | || |||| | |||||||||||||   || |||||| |||||| |||||  ||||| ||| ||| |||||||||  |||||||    
T  1404593 aattctactgaactccctgccgatccagacatgcacttagtagtgtttaccttcttcaacgtgtttgttatttgtctttta-ttaataataacaatttaa 1404495  T
Q  209 gggtccttcactgaca--ttgcaaaagtgaccaagaaaccaaaagcttgtctgcctatgcct 268  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||| | | |||||||||    
T  1404494 gggtccttcactcacacattgcaaaagtgaccaagaaaccaaaagcttattttcctatgcct 1404433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 405225 - 405147
Alignment:
Q  205 ttaagggtccttcactgacattgcaaaagtgaccaagaaaccaaaagcttgtctgcctatgcctgctacactacccttt 283  Q
    |||||| |||||||   ||||| ||||| ||||||| ||||||||||||||||||| ||||||| |||||| |||||||    
T  405225 ttaaggatccttcatccacatttcaaaaatgaccaaaaaaccaaaagcttgtctgcatatgcctactacaccacccttt 405147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 392 - 483
Target Start/End: Complemental strand, 821698 - 821607
Alignment:
Q  392 tttcttaatttgtgccccgagacaaagtttacaatgacctacatagcagcacaaagttcctaaaaccagcaaatccaacaatctcatggtag 483  Q
    ||||||||||||||| |||||||||||||||  | ||| | |||| ||||||| | ||| |||||||| |||||| |||| | |||||||||    
T  821698 tttcttaatttgtgcaccgagacaaagtttaggacgactttcataacagcacatatttcataaaaccaccaaatcgaacagtttcatggtag 821607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 26592353 - 26592319
Alignment:
Q  256 tctgcctatgcctgctacactacccttttaaaatt 290  Q
    ||||||||| |||||||||||||||||||||||||    
T  26592353 tctgcctatacctgctacactacccttttaaaatt 26592319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 598
Target Start/End: Original strand, 973779 - 973888
Alignment:
Q  489 aacataatgtgataactctgtaggcctccaaatgcaaagtcacgcatcgtacaagttctaagggttgacgaaaggcagctcggaacaaattttggatggg 588  Q
    ||||||||||||| ||  ||| ||||| || |||||||||| | ||| || |||||| ||||| |||| | ||| || || |||||||||||||||| ||    
T  973779 aacataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgtaaggtttgatgtaagacaacttggaacaaattttggattgg 973878  T
Q  589 accacttttc 598  Q
     ||| |||||    
T  973879 cccaattttc 973888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 45809515 - 45809576
Alignment:
Q  222 acattgcaaaagtgaccaagaaaccaaaagcttgtctgcctatgcctgctacactacccttt 283  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||| || |||||||||||    
T  45809515 acattgcaaaagtaacctagaaaccaaaagcttatctgcctatgcctactgcactacccttt 45809576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 45809438 - 45809500
Alignment:
Q  112 aattctaccgaactcaccgctgatctaaacatgcacttagtgtctaccttattcaacatgttt 174  Q
    ||||||||||||||| || | |||| |||||| ||||||||||||||||| ||||||||||||    
T  45809438 aattctaccgaactcgccaccgatccaaacatacacttagtgtctaccttcttcaacatgttt 45809500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 781
Target Start/End: Original strand, 45810460 - 45810543
Alignment:
Q  700 aagaaaggaaaaaataaattcaatatgactgttagatttaagaaacaaacctga-aaaggtc-agattttgaagcttaggacaa 781  Q
    ||||||| |||||||||||  |||||||  |||| |||||| || ||||||||| ||||||| ||| |||||||||||||||||    
T  45810460 aagaaagaaaaaaataaatcaaatatgatcgttaaatttaacaagcaaacctgataaaggtcgagactttgaagcttaggacaa 45810543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 562
Target Start/End: Original strand, 10116520 - 10116591
Alignment:
Q  491 cataatgtgataactctgtaggcctccaaatgcaaagtcacgcatcgtacaagttctaagggttgacgaaag 562  Q
    |||||||||||||| ||||||||||  |||| |||| || ||||| ||||||||| ||||| |||| |||||    
T  10116520 cataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgtaaggtttgatgaaag 10116591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University