View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857-Insertion-6 (Length: 668)
Name: NF1857-Insertion-6
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857-Insertion-6 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 583; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 11 - 668
Target Start/End: Complemental strand, 34933607 - 34932950
Alignment:
| Q |
11 |
ttggaggtcaatccagatgcattagcacaagcagatagagctgaccaagagagaagggaaaaaacaccaagttctctttcaaggttgcatggaataccta |
110 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| ||| || | |||||||||||||||||||||||||||||| |
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| T |
34933607 |
ttggaggtgaatccagatgcactagcacaagcagatagagctgaccaagaaagaaggactaaagcagtaggttctctttcaaggttgcatggaataccta |
34933508 |
T |
|
| Q |
111 |
ttttggttaaggataacattgcaactaaggataaattgaacactactgcaggctcttttgcattgcttggctcactggtgccaagagacgcgggtgttgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34933507 |
ttttggttaaggataacattgcaactaaggataaattgaacactactgctggctcttttgcattgcttggctcactggtgccaagagacgcgggtgttgt |
34933408 |
T |
|
| Q |
211 |
taacaagttaaggaaagctggggctattatattggggaaggccaccctgagtgagtggtcatattacaggtctaatggagctcctagtgcttggagtgcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34933407 |
taacaagttaaggaaagctggggctattatattggggaaggccaccctgagtgagtggtcatattacaggtctaatggagctcctagtgcttggagtgcc |
34933308 |
T |
|
| Q |
311 |
agaggtggacatggaaaggtatataaacttactacttcttcttacttaatttgactatggtcttgctttgcaatccaaacctataactttaaattttgtt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34933307 |
agaggtggacatggaaaggtatataaacttactacttcttcttactttatttgactatggtcttgctttgcaatccaaacctataactttaaattttgtt |
34933208 |
T |
|
| Q |
411 |
ttgtagcattgcttatcatgtatttgcctatctgttaagaatctgatattcttatgaagtcatatggccaaacttttaaataaaactttttatgttagtt |
510 |
Q |
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| T |
34933207 |
ttgtagcattgcttatcatgtatttgcctatctgttaagaatctgatattcttatgaagtcatatggccaaacttttaaataaaactttttatgttagtt |
34933108 |
T |
|
| Q |
511 |
aagtgatggagtataggttggatttttgatagtttatgaggccttataaaactgaaaat-aaagatagtcactaatagtaatgcttaatgggtgtggttc |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |
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| T |
34933107 |
aagtgatggagtataggttggatttttgatagtttatgaggccttataaaactgaaaataaaaaatagtcactaatagtaatacttaatgggtgtggttc |
34933008 |
T |
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| Q |
610 |
agtttatttaactgtagctgagcttgtgggggtaggccgcagttcgatccccacaaaac |
668 |
Q |
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| T |
34933007 |
agttta-ttaactgtagctgagcttgtgggggtaggcctcagttcgatccccacaaaac |
34932950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 8 - 475
Target Start/End: Complemental strand, 34929519 - 34929051
Alignment:
| Q |
8 |
gtcttggaggtcaatccagatgcattagcacaagcagatagagctgaccaagagagaagggaaaaaacaccaagttctctttcaaggttgcatggaatac |
107 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||| |||||| || || ||||||||||||||||||||||||||| |
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| T |
34929519 |
gtcttggaggtgaatccagatgcactagcacaagcagatagagctgacaaggagagaagagaaaaagcagcaggttctctttcaaggttgcatggaatac |
34929420 |
T |
|
| Q |
108 |
ctattttggttaaggataacattgcaactaaggataaattgaacactactgcaggctcttttgcattgcttggctcactggtgccaagagacgcgggtgt |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||| | ||||||||||| || ||||| |
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| T |
34929419 |
ctattttggttaaggataacattgcaacaaaggataagctaaacactactgcaggctcttttgcactgcttggctcagtagtgccaagagatgcaggtgt |
34929320 |
T |
|
| Q |
208 |
tgttaacaagttaaggaaagctggggctattatattggggaaggccaccctgagtgagtggtcatattacaggtctaatggagctcctagtgcttggagt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
34929319 |
agttaacaagttaaggaaagctggggctattatattgggcaaggccactttgagtgagtggtcacattacaggtctaatggagctcctagtggttggagt |
34929220 |
T |
|
| Q |
308 |
gccagaggtggacatggaaaggtatataaacttactacttcttcttacttaatttgactatggtcttgctttgcaatccaaacctat--aactttaaatt |
405 |
Q |
| |
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|| ||||||||||| |||||||||||| || ||||||||| ||||||||||||||||| ||| ||| ||||| |||| |||| |||| |||| |||| |
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| T |
34929219 |
gctagaggtggacaaggaaaggtatat-aatttactactttttcttacttaatttgaccatgatctggcttttcaattcaaatctatccctcttttaatt |
34929121 |
T |
|
| Q |
406 |
ttgttttgtagcattgcttatcatgtatttgcctatctgttaagaatctgatattcttatgaagtcatat |
475 |
Q |
| |
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||||||| ||||||||||||| ||||||||| ||| |||| ||||||||||| ||||||||||||||| |
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| T |
34929120 |
ttgttttctagcattgcttattatgtatttgtctagatgttcggaatctgatatacttatgaagtcatat |
34929051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 34899356 - 34899033
Alignment:
| Q |
8 |
gtcttggaggtcaatccagatgcattagcacaagcagatagagctgaccaagagagaagggaaaaaacaccaagttctctttcaaggttgcatggaatac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899356 |
gtcttggaggtcaatccagatgcattagcagaagcagataaagctgatcaagagagaagggaaaaaacaccaagttctctttcaaggttgcatggaatac |
34899257 |
T |
|
| Q |
108 |
ctattttggttaaggataacattgcaactaaggataaattgaacactactgcaggctcttttgcattgcttggctcactggtgccaagagacgcgggtgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||| || ||||| |
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| T |
34899256 |
ctattttggttaaggataacattgcaactaaggataaattgaacactactgctggctcttttgcattgcttggatcagttgtgccaagagatgcaggtgt |
34899157 |
T |
|
| Q |
208 |
tgttaacaagttaaggaaagctggggctattatattggggaaggccaccctgagtgagtggtcatattacaggtctaatggagctcctagtgcttggagt |
307 |
Q |
| |
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||||| |||||||||| ||||||| ||||| ||||||||||| ||||| |||||||||||||| ||| |||| || ||||||||||| || ||||||| |
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| T |
34899156 |
tgttaccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtggtcacatttcaggacttttggagctcctaatggttggagt |
34899057 |
T |
|
| Q |
308 |
gccagaggtggacatggaaaggta |
331 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
34899056 |
gccagaggtggactaggaaaggta |
34899033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 34913196 - 34912829
Alignment:
| Q |
7 |
agtcttggaggtcaatccagatgcattagcacaagcagatagagctgaccaagagagaagggaaaaaacaccaagttctctttcaaggttgcatggaata |
106 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34913196 |
agtcttggaggtgaatccagatgcattagcacaagcagataaagctgaccaagagagaagggaaaaaacaccaagttctctttcaaggttgcatggaata |
34913097 |
T |
|
| Q |
107 |
cctattttggttaaggataacattgcaactaaggataaattgaacactactgcaggctcttttgcattgcttggctcactggtgccaagagacgcgggtg |
206 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| | ||||||||| | ||||||||||| || |||| |
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| T |
34913096 |
cctattttggttaaggataacactgcaactaaggatagattgaacactactgctggctcttttgcacttcttggctcagtcgtgccaagagatgcaggtg |
34912997 |
T |
|
| Q |
207 |
ttgttaacaagttaaggaaagctggggctattatattggggaaggccaccctgagtgagtggtcatattacaggtctaatggagctcctagtgcttggag |
306 |
Q |
| |
|
| |||| |||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| |||||||||||| | || |||| ||| ||||| |
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| T |
34912996 |
tggttaccaagttaaggaaagctggtgctatcatattagggaaggccactttgagtgagtggtcacattacaggtctagtaaagttcctggtggttggaa |
34912897 |
T |
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| Q |
307 |
tgccagaggtggacatggaaaggtatataaacttactacttcttcttacttaatttgactatggtcttgcttt |
379 |
Q |
| |
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||| ||||||||||| |||||||| || |||||||| ||||||||||||||||| | ||||| |||||| |
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| T |
34912896 |
tgctagaggtggacaaggaaaggt-----aatttactactacttcttacttaatttgagtttggtcgtgcttt |
34912829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 34922782 - 34922458
Alignment:
| Q |
7 |
agtcttggaggtcaatccagatgcattagcacaagcagatagagctgaccaagagagaagggaaaaaacaccaagttctctttcaaggttgcatggaata |
106 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
34922782 |
agtcttggaggtcaatccagatgcattagcagaagcagataaagctgatcaagagagaagggaaaaagcacctggttctctttcaaggttacatggaata |
34922683 |
T |
|
| Q |
107 |
cctattttggttaaggataacattgcaactaaggataaattgaacactactgcaggctcttttgcattgcttggctcactggtgccaagagacgcgggtg |
206 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||| | ||||||||||| || |||| |
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| T |
34922682 |
cctatgttggttaaggataacattgcaactaaggataagctaaacaccactgcaggctcttttgcattgcttggatcagttgtgccaagagatgcaggtg |
34922583 |
T |
|
| Q |
207 |
ttgttaacaagttaaggaaagctggggctattatattggggaaggccaccctgagtgagtggtcatattacaggtctaatggagctcctagtgcttggag |
306 |
Q |
| |
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|||||| |||||||||| ||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
34922582 |
ttgttaccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtggtcaaattacaggtctaatggagctcctagtggttggag |
34922483 |
T |
|
| Q |
307 |
tgccagaggtggacatggaaaggta |
331 |
Q |
| |
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||||||||||||||| ||||||||| |
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|
| T |
34922482 |
tgccagaggtggacaaggaaaggta |
34922458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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