View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857-Insertion-7 (Length: 582)
Name: NF1857-Insertion-7
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Complemental strand, 30275112 - 30274540
Alignment:
| Q |
8 |
ctttgtctacttgtagtagccatgaaatagcttcagctattcactataacgaccaatttgatgcaaacatgatccacaatccaatgccttctgccatttt |
107 |
Q |
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| T |
30275112 |
ctttgtctacttgtagcagccatgaaatagcttcagctattcactataacgaccaatttgatgcaaacatgatccacaatccaatgccttctgccatttt |
30275013 |
T |
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| Q |
108 |
tcaggtatgttttcactgataattccctaacaaatagtttcttctgattttgcatctatatatgcttatgtaagcttttatatttagtataaagtctagt |
207 |
Q |
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| T |
30275012 |
tcaggtatgttttcactgataattccctaacaaatagttgcttctgattttgcatctatatatgcttatgtaagcttttatatttagtataaagtctagt |
30274913 |
T |
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| Q |
208 |
ctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttgaagaagaaaatgtgttcgaagtgaattggttaatggaattactgagag |
307 |
Q |
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| T |
30274912 |
ctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttgaagaagaaaatgtgttcgaagtgaattggttaatggaattactgagag |
30274813 |
T |
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| Q |
308 |
aggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatgttagcttacaaactgatgaagccaaacaggt |
407 |
Q |
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| T |
30274812 |
aggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatgttagcttacaaactgatgaagccaaacaggt |
30274713 |
T |
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| Q |
408 |
tttccacttccctcccttctgtttattattgagtttcactatgagagagttttgaaaacaacatgcttctcaatttctcatccattatctttattccttg |
507 |
Q |
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| T |
30274712 |
tttccacttccctcccttctgtttattattgagtttcactatg--agagttttgaaaacaacatgcttctcaatttctcatccattatctttattccttg |
30274615 |
T |
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| Q |
508 |
aacagtttattatggatgtgcaattcctagtggaaattggaatgtatggaggatatttctccactgatcctttac |
582 |
Q |
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| T |
30274614 |
aacagtttattatggatgtgcaattcctagtggaaattggaatgtatggaggatatttctccactgatcctttac |
30274540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 277 - 434
Target Start/End: Original strand, 46270434 - 46270591
Alignment:
| Q |
277 |
gaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatg |
376 |
Q |
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| T |
46270434 |
gaagtgaattggttgaaaggattactaagagaggtgatggtgtgtaagtttatttgggtttccaagaacaaagagatcaatgcaataacagaagagcatg |
46270533 |
T |
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| Q |
377 |
ttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttatt |
434 |
Q |
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| T |
46270534 |
tgagcttacaaactgatgaggccaaacaggtttttgatttccctaccttgtgtttatt |
46270591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 46270328 - 46270422
Alignment:
| Q |
149 |
ttctgattttgcatctatatatgcttatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgagg |
243 |
Q |
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| T |
46270328 |
ttctgattttgcatccaagtatgcttatgcaagatttggtatttagtatgaagtttagtctatgccatgtgcaggctttatttctagaactgagg |
46270422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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