View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857-Insertion-9 (Length: 248)
Name: NF1857-Insertion-9
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857-Insertion-9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 24017443 - 24017681
Alignment:
| Q |
8 |
ttgatgttattgtgaagaagggttgataatctgatctttgtctaggaagccaatgtttttgtaattttgttttatgatgatttggatttgaat-actttg |
106 |
Q |
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| T |
24017443 |
ttgatgttattgtgaagaagggataataatctgatctttttctaggtagccaatgtttttgtaattttgttttatgatgatttggatttgaattacattg |
24017542 |
T |
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| Q |
107 |
atattcatatatgaactatcatattcttacatatgatatatcagtatgtgggaatttttcattaactgtttgacttaaaaatgtgtgttttaaaagtctt |
206 |
Q |
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| T |
24017543 |
atgttcatatatgaactatcat---cttacatatgatatatcagtatgtgggattttttcattaactgtttgacttaaaaatgtgtgttttaaaagtctt |
24017639 |
T |
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| Q |
207 |
ttctgctgaaaagtcaaagccattagttttgaagtttgatca |
248 |
Q |
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| T |
24017640 |
ttctgctgaaaagtcaaagccattagttttgaagtttgatca |
24017681 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 26231312 - 26231358
Alignment:
| Q |
73 |
tttgttttatgatgatttggatttgaa-tactttgatattcatatat |
118 |
Q |
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| T |
26231312 |
tttgttttatgatgacttggatttgaattattttgatattcatatat |
26231358 |
T |
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