View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18570_low_1 (Length: 425)
Name: NF18570_low_1
Description: NF18570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18570_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 3619330 - 3619143
Alignment:
| Q |
177 |
caagtaactgaccaaaatatctactactatacaatagcactaagattatattaaacagaagtgaaaatgagaacaactgtaggggacgtagattaaaaat |
276 |
Q |
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| T |
3619330 |
caagtaagtgaccaaaatatctactactatacaatagcactaagattatattaaacagaagtgaaaatgagaacaacggtaggggacgtagattaaaaat |
3619231 |
T |
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| Q |
277 |
tagcaatggcaattaggaaaatccgcctgcatttttctcaattccacatgacatgattaagacctgttttgataaacaatttaattac |
364 |
Q |
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| T |
3619230 |
tagcaatggcaattaggaaaatccgcctgcatttttctcaattcaatatgacattattaagacctgttttgataaacaatttaattac |
3619143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3619559 - 3619388
Alignment:
| Q |
1 |
aagttcaccacaa-cacatgatttgacagttatgcaagtta--------gtgtgttactactactttataaacatggaggaaagggtgacatgaaataat |
91 |
Q |
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| T |
3619559 |
aagttcaccacaaacacatgatttgacagtaatgcaagttatattactagtgtgttactactactttataaacatggaggaaagggtgacatgaaataat |
3619460 |
T |
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| Q |
92 |
caatttttccattctgtttctacttgcttccaatagaggaattctaaatattaatgtcaccttcatagtttg |
163 |
Q |
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| T |
3619459 |
caatttttccattctgtttctacttgcttccaatagaggaattctaaatattaatgtcatcttcatagtttg |
3619388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 408
Target Start/End: Complemental strand, 3619037 - 3619003
Alignment:
| Q |
374 |
tttcataagcaatcacagagagcatatggaaataa |
408 |
Q |
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| T |
3619037 |
tttcataagcaatcacagagagcatatggaaataa |
3619003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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