View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18570_low_2 (Length: 337)
Name: NF18570_low_2
Description: NF18570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18570_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 31642910 - 31642597
Alignment:
| Q |
13 |
catcataataattataacactatagtaccaataatccttcatcataatatt---atataattttaattttttgcatgcataaagtaaaaggctatccaca |
109 |
Q |
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| T |
31642910 |
catcataataattataagactatagtaccaataatccttcaacataatatttttatataattttaattttttgcatgcataaagcaaaaggctatccaca |
31642811 |
T |
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| Q |
110 |
tcaattgcatcatgcatatgatcatttgaccctgtaacataatttatgtcccatttggtccaaacccattgacacgttaatccgtgtacattagtcccct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31642810 |
tcaattgcatcatgcatatgatcatttgaccctgtaacataatttatgtcccatttggtccaaacccattgacacgttaatccgtgtacattagtcccct |
31642711 |
T |
|
| Q |
210 |
ctccctttatcccatgcatgatttcccttacctttttgccaatggggcacattctacaagaatttcacaagtcttctttggttatgcaaatttcacatta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31642710 |
ctccctttatcccatgcatgatttcccttacctttttgccaatggggcacattctacaagaatttcacaagtcttctttggttatgcaaatttcacatta |
31642611 |
T |
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| Q |
310 |
tgtacatatgcatg |
323 |
Q |
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|||||||||||||| |
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| T |
31642610 |
tgtacatatgcatg |
31642597 |
T |
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