View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18570_low_5 (Length: 250)

Name: NF18570_low_5
Description: NF18570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18570_low_5
NF18570_low_5
[»] chr7 (7 HSPs)
chr7 (1-186)||(7907487-7907673)
chr7 (1-135)||(45837842-45837978)
chr7 (7-134)||(39837393-39837522)
chr7 (4-64)||(5528305-5528365)
chr7 (3-137)||(32786826-32786962)
chr7 (34-130)||(2033677-2033775)
chr7 (112-144)||(38652621-38652653)
[»] chr4 (11 HSPs)
chr4 (1-135)||(50297628-50297764)
chr4 (1-133)||(54997695-54997830)
chr4 (5-138)||(32895468-32895603)
chr4 (1-135)||(31690587-31690722)
chr4 (5-135)||(28675676-28675808)
chr4 (8-134)||(14139016-14139144)
chr4 (23-135)||(29508720-29508834)
chr4 (3-53)||(36989869-36989919)
chr4 (44-135)||(14603008-14603101)
chr4 (114-143)||(22019538-22019567)
chr4 (100-135)||(41460529-41460565)
[»] scaffold0542 (1 HSPs)
scaffold0542 (1-135)||(4549-4684)
[»] chr1 (6 HSPs)
chr1 (1-84)||(4658706-4658789)
chr1 (7-134)||(5799731-5799860)
chr1 (3-109)||(31262594-31262702)
chr1 (3-138)||(41884607-41884744)
chr1 (41-133)||(8644680-8644773)
chr1 (3-64)||(48149250-48149311)
[»] chr3 (5 HSPs)
chr3 (5-142)||(54787783-54787922)
chr3 (3-108)||(37919194-37919299)
chr3 (7-105)||(48192590-48192688)
chr3 (100-135)||(24355448-24355484)
chr3 (110-138)||(28945977-28946005)
[»] chr2 (9 HSPs)
chr2 (48-129)||(1705047-1705130)
chr2 (3-126)||(20061055-20061180)
chr2 (3-135)||(14275791-14275925)
chr2 (3-126)||(39420193-39420318)
chr2 (34-109)||(42184863-42184939)
chr2 (68-135)||(13242226-13242295)
chr2 (23-132)||(36528403-36528514)
chr2 (100-137)||(44721342-44721380)
chr2 (7-110)||(36285005-36285109)
[»] chr6 (2 HSPs)
chr6 (4-76)||(10960565-10960637)
chr6 (100-135)||(154333-154369)
[»] chr8 (4 HSPs)
chr8 (5-109)||(31313345-31313450)
chr8 (100-138)||(38869903-38869942)
chr8 (68-135)||(15067673-15067742)
chr8 (33-135)||(6530372-6530476)
[»] scaffold0005 (1 HSPs)
scaffold0005 (44-135)||(214277-214370)
[»] chr5 (2 HSPs)
chr5 (89-136)||(29429729-29429777)
chr5 (100-139)||(42655892-42655932)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 7907487 - 7907673
Alignment:
Q  1 atactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttaggttggt 100  Q
    |||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  7907487 atactcattatagaaatagacatatcaaaaaccatgcattcaacttcttaaaaattgttatattgtattttccaatgcaaaattacttttttaggttgct 7907586  T
Q  101 taacatgtg-cttaagggcacaagttaacatgacccatattttttcagggaggaagaaacctacttcttacttatataacccgtgaa 186  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||    
T  7907587 taacatgtgccttaagggcacaagttaacatgacccatattttttcagtgaggaagaaacctacttcttacttaattaacccgtgaa 7907673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 45837842 - 45837978
Alignment:
Q  1 atactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttgg 99  Q
    |||||||||||| ||||| ||||||||||  |||||||| |||||| |||||| |||||||||||| |||||||||||||| || || ||||||| |||     
T  45837842 atactcattatagaaatacacatatcaaacggcgtgcattcaacttattaaaagttgtcatattgtgttttccaatgcaaagttgctctttttagattgc 45837941  T
Q  100 ttaacatgtg-cttaagggcacaagttaacatgaccc 135  Q
    |||||||||| | ||||||||||||||| ||||||||    
T  45837942 ttaacatgtgccctaagggcacaagttagcatgaccc 45837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 39837522 - 39837393
Alignment:
Q  7 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 105  Q
    |||||| ||||| || ||||||||  ||||||| ||||||||||||| ||| | |||| |||||| || |||||| || || ||||||| ||  ||||||    
T  39837522 attatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagttgacctattatatttttcagtgcaaagttgctatttttagattatttaaca 39837423  T
Q  106 tgtg-cttaagggcacaagttaacatgacc 134  Q
    | || | |||||||||||||||||||||||    
T  39837422 tatgccctaagggcacaagttaacatgacc 39837393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 5528305 - 5528365
Alignment:
Q  4 ctcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatatt 64  Q
    ||||||||||||||| |||||| ||||| ||| ||| |||||||||||||  |||||||||    
T  5528305 ctcattataaaaatacacatattaaaaatcgtacattcaacttcttaaaagctgtcatatt 5528365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 32786826 - 32786962
Alignment:
Q  3 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggtt 101  Q
    |||||||||| ||||| || ||||||||  ||||||| ||||||||||||| ||   ||||| | ||||||||| |||| || || ||||  ||||  ||    
T  32786826 actcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttttccaatacaaagttgctcttttcgggttcctt 32786925  T
Q  102 aacatgtg-cttaagggcacaagttaacatgacccat 137  Q
    |||||||| | | ||||||||||||| ||||||||||    
T  32786926 aacatgtgcccttagggcacaagttagcatgacccat 32786962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 2033677 - 2033775
Alignment:
Q  34 gtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttag-gttggttaacatgtg-cttaagggcacaagttaacat 130  Q
    |||||| |||||| |||||| |||  || || |||||| ||||||||||||| |||||| | |||| |||||||||| ||||| |||| ||||||||||    
T  2033677 gtgcattcaactttttaaaagttgatatgttatatttttcaatgcaaaattattttttttgagttgtttaacatgtgccttaaaggcataagttaacat 2033775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 38652653 - 38652621
Alignment:
Q  112 taagggcacaagttaacatgacccatatttttt 144  Q
    ||||||||||||||||||||||||| |||||||    
T  38652653 taagggcacaagttaacatgacccaaatttttt 38652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 50297764 - 50297628
Alignment:
Q  1 atactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttgg 99  Q
    |||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||     
T  50297764 atactcattatagaaatacacatatcaaaaggcgtgcattcaacttcttaaaagttgtcatattgtgttttccaatgcaaaattactcttttttggttgc 50297665  T
Q  100 ttaacatgtg-cttaagggcacaagttaacatgaccc 135  Q
    |||||||||| | ||||||||||||||||||||||||    
T  50297664 ttaacatgtgccctaagggcacaagttaacatgaccc 50297628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 54997830 - 54997695
Alignment:
Q  1 atactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattg-tattttccaatgcaaaattact-tttttaggttg 98  Q
    |||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||| ||||||   ||||||||||||||||| || |||||||||||    
T  54997830 atactcattatagaaataaacatatcaaaatgcgtgcattcaacttcttaaaagttgtaatattgcgtttttccaatgcaaaattgctctttttaggttg 54997731  T
Q  99 gttaacatgtg-cttaagggcacaagttaacatgac 133  Q
     |||||||||| | ||| | ||||||||||||||||    
T  54997730 cttaacatgtgccctaatgacacaagttaacatgac 54997695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 32895603 - 32895468
Alignment:
Q  5 tcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaa 103  Q
    |||||||||||||| |||||| ||||  |||| ||  ||||| |||||| |||||||||||||||||| |||||||||||| | |||||| |||| ||||    
T  32895603 tcattataaaaatacacatattaaaagacgtgtatttaactttttaaaagttgtcatattgtattttctaatgcaaaattattatttttaagttgtttaa 32895504  T
Q  104 catgtgct-taagggcacaagttaacatgacccata 138  Q
    |||||||| ||||   |||||||||||| |||||||    
T  32895503 catgtgctctaagaatacaagttaacataacccata 32895468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 31690587 - 31690722
Alignment:
Q  1 atactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttgg 99  Q
    ||||| |||||| ||||| |||||| |||| | |||||| || |||||||||| |||||||||||| ||||  |||||||||||  | ||||||| |||     
T  31690587 atacttattatagaaatacacatattaaaatgtgtgcattcagcttcttaaaagttgtcatattgtgtttt-taatgcaaaattgttctttttagattgc 31690685  T
Q  100 ttaacatg-tgcttaagggcacaagttaacatgaccc 135  Q
    |||||||| | ||||||||||||||||| ||||||||    
T  31690686 ttaacatgttccttaagggcacaagttagcatgaccc 31690722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 28675808 - 28675676
Alignment:
Q  5 tcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttt-ttaggttggttaa 103  Q
    |||||||| ||||| |||||||||||    ||||| |||||  |||||| | |  ||||| | ||||| ||||||||||| || || |||||||| ||||    
T  28675808 tcattatagaaatatacatatcaaaatttttgcattcaactgtttaaaagtcgatatattatgttttctaatgcaaaattgctcttattaggttgcttaa 28675709  T
Q  104 catgtgct-taagggcacaagttaacatgaccc 135  Q
    |||||||  ||||||||||||||||||||||||    
T  28675708 catgtgccctaagggcacaagttaacatgaccc 28675676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 14139016 - 14139144
Alignment:
Q  8 ttataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttttta-ggttggttaacat 106  Q
    ||||| ||||| || ||||||||| |||| |  ||| ||||||||| ||   ||||| ||||||||||| || ||||||||||||| ||||  |||||||    
T  14139016 ttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaatattatattttccaatacataattacttttttagggttccttaacat 14139115  T
Q  107 gtg--cttaagggcacaagttaacatgacc 134  Q
    |||  ||||| | |||||||||||||||||    
T  14139116 gtgcccttaa-gacacaagttaacatgacc 14139144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 29508720 - 29508834
Alignment:
Q  23 tatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcac 120  Q
    ||||||||  |||| || ||||||||||||| ||   ||||| | ||||||||||||||||| || ||||| ||||  |||||||||| | | |||||||    
T  29508720 tatcaaaagtcgtgtattcaacttcttaaaagtttaaatattatgttttccaatgcaaaattgctctttttgggttccttaacatgtgcccttagggcac 29508819  T
Q  121 aagttaacatgaccc 135  Q
    ||||||||| |||||    
T  29508820 aagttaacacgaccc 29508834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 36989869 - 36989919
Alignment:
Q  3 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 53  Q
    |||||||||||||||| |||||| ||||  ||||||| |||||||||||||    
T  36989869 actcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaa 36989919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 14603101 - 14603008
Alignment:
Q  44 cttcttaaaaattgtcatattgtattttccaatgcaaaattac-ttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 135  Q
    ||||||||||||||  ||||| |||||| |||| ||||||| | |||||||| ||| |||||||||| | |||| |||||| ||||||| ||||    
T  14603101 cttcttaaaaattgatatattatatttttcaatacaaaattgctttttttagattgtttaacatgtgccataagagcacaaattaacataaccc 14603008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 22019538 - 22019567
Alignment:
Q  114 agggcacaagttaacatgacccatattttt 143  Q
    ||||||||||||||||||||||||||||||    
T  22019538 agggcacaagttaacatgacccatattttt 22019567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 41460565 - 41460529
Alignment:
Q  100 ttaacatgtgct-taagggcacaagttaacatgaccc 135  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41460565 ttaacatgtgctctaagggcacaagttaacatgaccc 41460529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4549 - 4684
Alignment:
Q  1 atactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttgg 99  Q
    |||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||| | |||| |||||  ||||| || |||||||||||     
T  4549 atactcattatagaaatatacatatcaaaatgcgtgcattcaacttcttaaaaattgtcatattat-tttttcaatgtgaaattgctctttttaggttgc 4647  T
Q  100 ttaacatgtg-cttaagggcacaagttaacatgaccc 135  Q
    |||| ||||| ||| | | ||||||||||||||||||    
T  4648 ttaatatgtgcctttatgacacaagttaacatgaccc 4684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4658706 - 4658789
Alignment:
Q  1 atactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatt 84  Q
    ||||| |||||||||||| |||||| |||| | |||||| |||||||||||||||||||||||||| |||||| ||| ||||||    
T  4658706 atacttattataaaaatacacatattaaaaggtgtgcattcaacttcttaaaaattgtcatattgtgttttccgatgtaaaatt 4658789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 5799860 - 5799731
Alignment:
Q  7 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 105  Q
    |||||||||||| |||||||||||   |||||| ||||||||||||  ||| ||||||   |||| |||||||||| | || ||||||||||| ||||||    
T  5799860 attataaaaatatacatatcaaaagttgtgcattcaacttcttaaaggttgacatattacgtttttcaatgcaaaactgctctttttaggttgtttaaca 5799761  T
Q  106 tgtg-cttaagggcacaagttaacatgacc 134  Q
    |||| | ||||||||||||||| |||||||    
T  5799760 tgtgccataagggcacaagttagcatgacc 5799731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 31262594 - 31262702
Alignment:
Q  3 actcattataaaaataga-catatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatt-acttttttaggttggt 100  Q
    |||||||||| ||||| | |||||||||||  |||||| ||||||||||||| ||| |||||| | |||||||||||||||||   |||||||||||| |    
T  31262594 actcattatagaaatataacatatcaaaaattgtgcattcaacttcttaaaagttgacatattatgttttccaatgcaaaattgttttttttaggttgtt 31262693  T
Q  101 taacatgtg 109  Q
    |||||||||    
T  31262694 taacatgtg 31262702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 41884744 - 41884607
Alignment:
Q  3 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttt-ttaggttggtt 101  Q
    |||||||||| ||| | |||||||||||  | |||||   ||||||||||| ||   ||||| |||||||||||||||| ||  |||| |||||||  ||    
T  41884744 actcattatagaaacatacatatcaaaagtcatgcatttgacttcttaaaagttaaaatattttattttccaatgcaaagttgtttttgttaggttcctt 41884645  T
Q  102 aacatgtgc-ttaagggcacaagttaacatgacccata 138  Q
    ||||||||| || | ||||||||||||||| |||||||    
T  41884644 aacatgtgcctttaaggcacaagttaacattacccata 41884607  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 8644773 - 8644680
Alignment:
Q  41 caacttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttaggttggttaacatgtgct-taagggcacaagttaacatgac 133  Q
    ||||||||||||||||   || || |||||||||||||||| || ||||||| | ||  |||||||  ||| | ||||||||||||||||||||    
T  8644773 caacttcttaaaaattaaaatgttatattttccaatgcaaagttgcttttttggatttcttaacatacgctcttagggcacaagttaacatgac 8644680  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 48149311 - 48149250
Alignment:
Q  3 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatatt 64  Q
    |||||| ||| ||||| ||||||||||| |||||||| |||||| |||||| ||||| ||||    
T  48149311 actcataatagaaatacacatatcaaaatgcgtgcattcaactttttaaaagttgtcctatt 48149250  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 54787922 - 54787783
Alignment:
Q  5 tcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatta-cttttttaggttggttaa 103  Q
    |||||||||||||| |||||||||||| ||| ||| |||| |||||||| ||   || || |||||| ||||| ||| ||| ||||||||||||  |||     
T  54787922 tcattataaaaatatacatatcaaaaatcgtacattcaacatcttaaaagttaaaatgttatatttttcaatgaaaagttatcttttttaggttccttat 54787823  T
Q  104 catgtg-cttaagggcacaagttaacatgacccatatttt 142  Q
    |||||| ||||||| |||||||||||||| ||| ||||||    
T  54787822 catgtgccttaaggacacaagttaacatgtcccttatttt 54787783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 37919194 - 37919299
Alignment:
Q  3 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttaggttggtta 102  Q
    |||||||||| ||||| || |||||||||  |||||| ||||||||||||| ||| |||||| | |||||||||| ||| ||  | ||||| |||| |||    
T  37919194 actcattatataaatatacgtatcaaaaattgtgcattcaacttcttaaaagttgacatattatgttttccaatgtaaagttgttcttttatgttgctta 37919293  T
Q  103 acatgt 108  Q
    ||||||    
T  37919294 acatgt 37919299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 48192688 - 48192590
Alignment:
Q  7 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttaggttggttaaca 105  Q
    |||||| ||||| || ||| ||||| || |||| ||||||||||||| ||| |||||| | ||||| | ||||||||| ||||||||| ||| ||||||    
T  48192688 attatagaaatatacttattaaaaatcgcgcattcaacttcttaaaagttgacatattatgttttcaattgcaaaattgcttttttagattgcttaaca 48192590  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 24355484 - 24355448
Alignment:
Q  100 ttaacatgtgc-ttaagggcacaagttaacatgaccc 135  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24355484 ttaacatgtgccttaagggcacaagttaacatgaccc 24355448  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 28945977 - 28946005
Alignment:
Q  110 cttaagggcacaagttaacatgacccata 138  Q
    |||||||||||||||||||||||||||||    
T  28945977 cttaagggcacaagttaacatgacccata 28946005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 1705047 - 1705130
Alignment:
Q  48 ttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaaca 129  Q
    |||||| |||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| | ||||||||||||||||||    
T  1705047 ttaaaagttgtcatattgtgttttccaatccaaaattgctctttttaggttgcttaacatgtgccctaagggcacaagttaaca 1705130  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 20061180 - 20061055
Alignment:
Q  3 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggtt 101  Q
    |||||||||| ||||| || ||||||||   |||||| ||||||||||||| ||| |||||| | |||| ||||||||| || || ||||||||||| ||    
T  20061180 actcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacatattatgtttttcaatgcaaagttgctctttttaggttgctt 20061081  T
Q  102 aacatgtg-cttaagggcacaagtta 126  Q
    |||||||| | |||||| ||||||||    
T  20061080 aacatgtgccctaagggaacaagtta 20061055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 14275791 - 14275925
Alignment:
Q  3 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggtt 101  Q
    |||||||||| ||||| || ||||||||  | ||||| ||||||||||||| ||   ||||| | ||||||||||||||||| || ||||| ||||| ||    
T  14275791 actcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatattatgttttccaatgcaaaattgctctttttgggttgctt 14275890  T
Q  102 aacatgtg-cttaagggcacaagttaacatgaccc 135  Q
    || ||||| ||| |||| |||||||| ||||||||    
T  14275891 aatatgtgcctttagggaacaagttagcatgaccc 14275925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 39420318 - 39420193
Alignment:
Q  3 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggtt 101  Q
    |||||||||| ||||| |||||| |||   ||||||| ||||||||| ||| ||   ||||| | |||||||||||||| || || ||||||||||  ||    
T  39420318 actcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatattatgttttccaatgcaaagttgctctttttaggttcctt 39420219  T
Q  102 aacatgtg-cttaagggcacaagtta 126  Q
    |||||||| |||||||||||||||||    
T  39420218 aacatgtgccttaagggcacaagtta 39420193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 42184863 - 42184939
Alignment:
Q  34 gtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg 109  Q
    |||||| |||||||| |||| |||||||||||| ||||| ||||||||||| || |||||| |||| ||||||||||    
T  42184863 gtgcattcaacttctaaaaagttgtcatattgtgttttcaaatgcaaaattgctctttttaagttgtttaacatgtg 42184939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 13242226 - 13242295
Alignment:
Q  68 ttttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 135  Q
    |||||||||||||||||||| |||||| |||  |||||||||| | |||| |||||||||||||||||||    
T  13242226 ttttccaatgcaaaattactctttttaagttctttaacatgtgccataagtgcacaagttaacatgaccc 13242295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 36528403 - 36528514
Alignment:
Q  23 tatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgt-gcttaagggcac 120  Q
    ||||||||  ||||||| ||||||||||||| ||| ||| || | ||||||||||||||  | || |||||| |||| |||||||||  | ||||| |||    
T  36528403 tatcaaaagtcgtgcattcaacttcttaaaagttgacatgttatgttttccaatgcaaagctgctctttttaagttgcttaacatgtaccctaaggacac 36528502  T
Q  121 aagttaacatga 132  Q
    ||||||||||||    
T  36528503 aagttaacatga 36528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 44721380 - 44721342
Alignment:
Q  100 ttaacatgtgct-taagggcacaagttaacatgacccat 137  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  44721380 ttaacatgtgctctaagggcacaagttaacatgacccat 44721342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 36285005 - 36285109
Alignment:
Q  7 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 105  Q
    |||||||||||| |||||| ||||   || ||| ||||||||||||| ||   ||||| | |||| |||||||||||| || |||||| |||| ||||||    
T  36285005 attataaaaatatacatattaaaagttgtacattcaacttcttaaaagttaaaatattatttttttcaatgcaaaattgctctttttatgttgtttaaca 36285104  T
Q  106 tgtgc 110  Q
    |||||    
T  36285105 tgtgc 36285109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 10960565 - 10960637
Alignment:
Q  4 ctcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaat 76  Q
    ||||||||| ||||| |||||| ||||| ||||||| ||||||||||| | |||| ||||||| |||||||||    
T  10960565 ctcattatagaaatacacatattaaaaaacgtgcattcaacttcttaatagttgttatattgtgttttccaat 10960637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 154333 - 154369
Alignment:
Q  100 ttaacatgtg-cttaagggcacaagttaacatgaccc 135  Q
    |||||||||| ||||||||||||||||||||||||||    
T  154333 ttaacatgtgtcttaagggcacaagttaacatgaccc 154369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 31313345 - 31313450
Alignment:
Q  5 tcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaa 103  Q
    |||||||| ||||| || ||||||||  | ||||| |||||| |||||| ||| |||||| | |||||||||||||| || || ||||||| ||| ||||    
T  31313345 tcattatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagttgacatattatgttttccaatgcaaagttgctctttttagattgcttaa 31313444  T
Q  104 catgtg 109  Q
    ||||||    
T  31313445 catgtg 31313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 38869903 - 38869942
Alignment:
Q  100 ttaacatgtgc-ttaagggcacaagttaacatgacccata 138  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  38869903 ttaacatgtgccttaagggcacaagttaacatgacccata 38869942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 15067673 - 15067742
Alignment:
Q  68 ttttccaatgcaaaattactt-ttttaggttggttaacatgtgc-ttaagggcacaagttaacatgaccc 135  Q
    |||||||||||||| || ||| |||||||||  ||||||||||| || | ||||||||||||||||||||    
T  15067673 ttttccaatgcaaagttgcttattttaggttccttaacatgtgcctttacggcacaagttaacatgaccc 15067742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 6530372 - 6530476
Alignment:
Q  33 cgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacat 130  Q
    ||||||| ||||||||||||| |    ||||| | |||||||||||||| || || ||||| ||||| |||||||||| | | ||| |||||||||||||    
T  6530372 cgtgcattcaacttcttaaaagtcaatatattatgttttccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacat 6530471  T
Q  131 gaccc 135  Q
    |||||    
T  6530472 gaccc 6530476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 214277 - 214370
Alignment:
Q  44 cttcttaaaaattgtcatattgtattttccaatgcaaaattac-ttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 135  Q
    ||||||||||||||  ||||| |||||| |||| ||||||| | |||||||| ||| |||||||||| | |||| |||||| ||||||| ||||    
T  214277 cttcttaaaaattgatatattatatttttcaatacaaaattgctttttttagattgtttaacatgtgccataagagcacaaattaacataaccc 214370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 29429729 - 29429777
Alignment:
Q  89 ttttaggttggttaacatgtgct-taagggcacaagttaacatgaccca 136  Q
    |||| ||||| |||||||||||  |||||||||||||||||||||||||    
T  29429729 ttttgggttgcttaacatgtgccctaagggcacaagttaacatgaccca 29429777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 42655932 - 42655892
Alignment:
Q  100 ttaacatgtg-cttaagggcacaagttaacatgacccatat 139  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  42655932 ttaacatgtgtcttaagggcacaagttaacatgacctatat 42655892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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