View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18571_high_1 (Length: 638)
Name: NF18571_high_1
Description: NF18571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18571_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 4 - 638
Target Start/End: Complemental strand, 43282091 - 43281448
Alignment:
| Q |
4 |
ataaagcaaagaactagtccaaatccaccgtctgcaataactcatttccctaaaaatttcaacaaaat-ggtggaaccacttcttcaaggagcaacaata |
102 |
Q |
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| T |
43282091 |
ataaagcaaagaactcgtccaaatccac-gtctgcaataactcatgtccctaaaaatttcaacaaaattggtggaaccacttcttcaaggagcaacaata |
43281993 |
T |
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| Q |
103 |
acatttgtatgaagtatgaaccaagttnnnnnnnccaaaacaagaaaatctatgtatatgggtaaacgacctcaattgactgcgattttatgttacattt |
202 |
Q |
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| T |
43281992 |
acatttgtatgaagtatgaaccaagttaaaaaa-ccaaaacaagaaaatctatgtatatgggtaaacgacctcaattgactgcgattttatgttacattt |
43281894 |
T |
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| Q |
203 |
aaatagcacagggacttggcaattgttaatttgacgcaaataaagagacaaagtgattaggttatgctt----------tcttttagtgcttggtaataa |
292 |
Q |
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| T |
43281893 |
aagtagcacagggacttggcaattgttaatttgacgcaaataaagagacaaagtgattaggttatgcttcattcccctttcttttagtgcttagtaataa |
43281794 |
T |
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| Q |
293 |
ctaagtctcttttctacgatccttccaaagtggctttaaagacatttgaacatagtagctagctccatcgttggacactcgcatccatttcttagaaagg |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
43281793 |
ctaagtctcttttctacgatccttccaaagtggctttaaagacatttgaacatagtagctagctccatcgttggacactagcatccatttctcagaaagg |
43281694 |
T |
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| Q |
393 |
tttccttttggtccagaaactagcactctttttataatcaaaacaccctatgttcttatgtttgctcttattcatacaaaagagtgcataagtaccaaat |
492 |
Q |
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| T |
43281693 |
tttccttttggtccagaaactagcactctttttataatcaaaacaccctatgttcttatgtttgctcttattcatacaaaagagtggataagtaccaaat |
43281594 |
T |
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| Q |
493 |
tgttatcactaattgtaataaaataagttattcactaatagtacaccctaaattttattgttacatgtttttgttttcctctgcaaccagatttagaact |
592 |
Q |
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| T |
43281593 |
tgttatcactaattgtaataaaataagttattcactaataatacaccctaaattttgttgttacatgtttttgttttcctctgcaaccagatttagaact |
43281494 |
T |
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| Q |
593 |
gaatttctgctgaggctatattttactgtcacaattggtggtaacc |
638 |
Q |
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| T |
43281493 |
gaatttctactgaggctatattttactgtcacaattggtggcaacc |
43281448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 493
Target Start/End: Original strand, 9154395 - 9154476
Alignment:
| Q |
412 |
ctagcactctttttataatcaaaacaccctatgttcttatgtttgctcttattcatacaaaagagtgcataagtaccaaatt |
493 |
Q |
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||||||||||| | ||||||| ||||| ||| ||||||||| |||||||| || |||||| ||||| ||| ||||||||| |
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| T |
9154395 |
ctagcactcttctcataatcacaacactctaagttcttatggctgctcttaatcgtacaaaggagtgaatacataccaaatt |
9154476 |
T |
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