View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18571_high_2 (Length: 494)
Name: NF18571_high_2
Description: NF18571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18571_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 9253143 - 9253589
Alignment:
| Q |
19 |
ctagatacattcatccacgtcttaaattgtatctcctaaatttcgtctatttacatcaagannnnnnnnnnnnctatcaatatttggaaattataattga |
118 |
Q |
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| T |
9253143 |
ctagatacattcatccacgtcttaaattgtatctcctaaatttcgtctatttacatcaaggttttttctttttctatcaatatttggaaattataattga |
9253242 |
T |
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| Q |
119 |
tttttcaacaagaataaattgtaattcagatttaaattggaagtattattattaaagaaatgatgaatagtaagggcaatatctctatatggaatcttcg |
218 |
Q |
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| T |
9253243 |
tttttcaacaagaataaattgtaattcagatttaaattggaagtattattattaaagaaatgatgaatagtaagggcaatatctctatatggaatcttcg |
9253342 |
T |
|
| Q |
219 |
atcttttatgtcttgtgaataatggaagtgttggagttgaaggcaactcttttatcctgtttcgtcacgttttcaaaaattaatgataaggtacttgtgt |
318 |
Q |
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| T |
9253343 |
atcttttatgtcttgtgaataatggaagtgttggagttgaaggca-ctcttttatcctgtttcgtcacgttttcataaattaatgataaggtacttgtgt |
9253441 |
T |
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| Q |
319 |
catcttatattgccacgaatttcctttatatatacttatgttgtcatggaacattatagtatagttttgatatatatgattaatatacacatgacttgtt |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9253442 |
catcttatattgccacgaatttcttttatatatacttatgttgtcatggaacattatagtatagttttgatatatatgattaatatacacatgacttgtt |
9253541 |
T |
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| Q |
419 |
ggtcttttgaattgagagtattattattggtttggatttattgaaggg |
466 |
Q |
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| T |
9253542 |
ggtcttttgaattgagagtattattattggtttggatttattgaaggg |
9253589 |
T |
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