View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18571_high_3 (Length: 409)
Name: NF18571_high_3
Description: NF18571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18571_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 12498762 - 12498380
Alignment:
| Q |
11 |
atcatcatccaaatcggatttgcatcattataattatttacagattttactcttgggtgttgtagctaaatagcttttatgaaattccttgatgaagttg |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12498762 |
atcatcatccaaatcggatttgcatcaacataattatttacagcttttactcttgggtgttgtagctaaatagcttttatgaaattccttgatgaagttg |
12498663 |
T |
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| Q |
111 |
cacccttactggtccattaaaagttttcaataagaatccaaattaaatactttttaaaacgaacacgacactgacacatattgtttcgatcagttccatt |
210 |
Q |
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| T |
12498662 |
cacccttactggtccattaaatgttttcaataagaatccaaattaaatactttttaaaacgaacacgacactgacacatattgtttcgatcagttccatt |
12498563 |
T |
|
| Q |
211 |
ttctcaaataattaatttattgttgtttacatatgaatgtcggtatcatgtccaatatttgcatcagtactgtatatcttgttaaactcaaatgtctttc |
310 |
Q |
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| T |
12498562 |
ttctcaaataattaatttattgttgtttacatataaatgtcggtatcatgtccaatatttgcatcagtactgcatatcttgttaaactcaaatgtctttc |
12498463 |
T |
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| Q |
311 |
ctactctacagactcatctagatagatgataaagttcgtcacgttggacttttctattattttctctttgtgccttatgaaat |
393 |
Q |
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| T |
12498462 |
ctactctacagactcatctagatagatgataaagttcgtcacgttggacttttctattattttctctttgtgccttatgaaat |
12498380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 12582859 - 12582478
Alignment:
| Q |
11 |
atcatcatccaaatcggatttgcatcattataattatttacagattttactcttgggtgttgtagctaaatagcttttatgaaattccttgatgaagttg |
110 |
Q |
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| T |
12582859 |
atcatcatccaaatcagatttgcatcaacataaatatttacatattttactattgggtgctgtagctgaatagcttttatgaaattccttaatgaagttg |
12582760 |
T |
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| Q |
111 |
cacccttactggtccattaaaagttttcaataagaatccaaattaaatactttttaaaacgaacacgacactgacacatattgtttcgatcagttccatt |
210 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||||||||| ||||||||||||| |
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| T |
12582759 |
tacccttactggtccattaaaaattttcaataagaatccaaattaaatacttcttacaaccaaca-gacaatgacacatattgtttagatcagttccatt |
12582661 |
T |
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| Q |
211 |
ttctcaaataattaatttattgttgtttacatatgaatgtcggtatcatgtccaatatttgcatcagtactgtatatcttgttaaactcaaatgtctttc |
310 |
Q |
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| T |
12582660 |
ttctcaaataattaatttactgttgactacatatgaatgtcggtatcatgtccaatatctgcactcgtattgcatatcttgctaaactcaaatgtctttc |
12582561 |
T |
|
| Q |
311 |
ctactctacagactcatctagatagatgataaagttcgtcacgttggacttttctattattttctctttgtgccttatgaaat |
393 |
Q |
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| T |
12582560 |
ctactctacagactcatctggatagataataaagtttgtcacgttggacttttcaattatttgctctttgtgcattatgaaat |
12582478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 12522544 - 12522365
Alignment:
| Q |
11 |
atcatcatccaaatcggatttgcatcattataattatttacagattttactcttgggtgttgtagctaaatagcttttatgaaattccttgatgaagttg |
110 |
Q |
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||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12522544 |
atcatcatccaaatcggatttccatcaacata-ttatttacagattttactcttgggtgttgtagctgaatagcttttatgaaattccttgatgaagttg |
12522446 |
T |
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| Q |
111 |
cacccttactggtccattaaaagttttcaataagaatccaaattaaatactttttaaaacgaacacgacactgacacatat |
191 |
Q |
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| T |
12522445 |
cacccttactggtccattaaaagttttcaataagaatccaaattaaatacttcttaaaacgaatacaacactgacacatat |
12522365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 239 - 393
Target Start/End: Complemental strand, 12522370 - 12522216
Alignment:
| Q |
239 |
acatatgaatgtcggtatcatgtccaatatttgcatcagtactgtatatcttgttaaactcaaatgtctttcctactctacagactcatctagatagatg |
338 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12522370 |
acatatgaatgtcggtatcatatccaatatttgcatcaatactgcatatcttgctacactcaaatgtctttcctactctacagactcatctagatagatg |
12522271 |
T |
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| Q |
339 |
ataaagttcgtcacgttggacttttctattattttctctttgtgccttatgaaat |
393 |
Q |
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| T |
12522270 |
ataaagttcgtcacgttggacttttctattattttctctttgtgccttatgaaat |
12522216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 439738 - 439778
Alignment:
| Q |
112 |
acccttactggtccattaaaagttttcaataagaatccaaa |
152 |
Q |
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| T |
439738 |
acccttactgatccattaaaagttttaaataaggatccaaa |
439778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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